CV712180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAPA (Photosystem II reaction center psb28 protein OS=Cyanophora paradoxa GN=psb28 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.052e-30 Identity = 65/108 (60.19%), Postives = 81/108 (75.00%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQFIQG DE +PDVKL++S+DG+NG+A F F +P+VFD G+ITG Y+IDEEG L + V AKF+NG+P IEA YIM + EW+RF+RFMERYA QN L F K Sbjct: 4 IQFIQGVDEEAIPDVKLSRSQDGANGIAKFYFDKPTVFDVYQ--GEITGLYLIDEEGELSTRTVYAKFINGKPQSIEASYIMNNREEWERFIRFMERYAKQNDLSFTK 109
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP6 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psb28 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.819e-30 Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+RYA NGL F + Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNE7 (Photosystem II reaction center psb28 protein OS=Synechococcus elongatus (strain PCC 7942) GN=psb28 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 6.819e-30 Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIG-DITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF +G DE VPDV+LT+SRDG NG A F F EP GE+ DITG Y++D+EG L + +V AKF+NG+P+ +EA Y+MRSP EWDRFMRFM+RYA NGL F + Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGELATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_THEEB (Photosystem II reaction center psb28 protein OS=Thermosynechococcus elongatus (strain BP-1) GN=psb28 PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 5.773e-29 Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = -1 Query: 273 MAVKPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 614 M IQFI+G +E VPDV+LT++RDGS+G A+F F P + ++TG YM+DEEG + + DV+AKF+NG+P IEA Y MRSP+EWDRF+RFM+RYA +GL F K Sbjct: 1 MGAMAEIQFIRGINEEVVPDVRLTRARDGSSGQAMFYFDNPKIVQEGNL--EVTGMYMVDEEGEIVTRDVNAKFINGQPVAIEATYTMRSPQEWDRFIRFMDRYAASHGLGFQK 112
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP8 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 8801) GN=psb28 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.742e-28 Identity = 58/106 (54.72%), Postives = 77/106 (72.64%), Query Frame = -1 Query: 279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596 IQF +G E +PDV+LT+SR G +G A F F EPS+F+S ++TG Y++DEEG + + +V KF+NG+ + IEA IMRSP EWDRFMRFMERYA + GL+F Sbjct: 4 IQFSRGVAEPVIPDVRLTRSRSGQSGTATFYFREPSIFNSEST-DEVTGMYLVDEEGEITTTEVKGKFINGKATDIEAILIMRSPEEWDRFMRFMERYAKEQGLEF 108
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ACAM1 (Photosystem II reaction center psb28 protein OS=Acaryochloris marina (strain MBIC 11017) GN=psb28 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 4.887e-28 Identity = 61/108 (56.48%), Postives = 80/108 (74.07%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQFI+G DE +PDV+LT+++DGS+G AIF F P++ G++ ++ G Y+ DEEG L ++DVSAKFVNG+P IEA Y M+S EWDRFMRFM RYA +GL F K Sbjct: 5 IQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQE-GKL-EVMGMYLQDEEGELTTLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSK 110
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_NOSP7 (Photosystem II reaction center psb28 protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psb28 PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.422e-27 Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF +G DE+ +P+V+LT+SR G +G A F F+ P + D G DITG Y+ DEEG + + +V AKFVNG+P +EA Y+M+S +EWDRFMRFMERYA +N L K Sbjct: 4 IQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQ-GSTEDITGMYLSDEEGEIITREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSK 110
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAME (Photosystem II reaction center psb28 protein OS=Cyanidioschyzon merolae GN=psb28 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.857e-27 Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = -1 Query: 279 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 599 +IQFIQG DE +P V+LT+SRDG G A+F F +P + GEI TG YMIDEEG + + +V AKFVNG+P IEA Y+M++ + W+RFMRFM RYA GL F Sbjct: 3 SIQFIQGVDEDIIPTVRLTRSRDGQTGTAVFRFVQPKLLQQQGEI---TGMYMIDEEGEIVTREVQAKFVNGQPQIIEALYVMKNAQAWERFMRFMNRYAEAKGLSF 106
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNP2 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psb28 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.425e-27 Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF QG +E VP ++LT+S DGS G A+FSF +P+ + +ITG Y+IDEEG + + +V AKF +G+P IEA+ +MRS EWDRFMRFMERYA +NGL+F K Sbjct: 4 IQFSQGVNEPEVPGIRLTRSPDGSTGTAVFSFEDPAAL-AQESTDEITGMYLIDEEGEIVTREVKAKFYDGKPRIIEARLVMRSTAEWDRFMRFMERYAAENGLEFTK 110
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_ANAVT (Photosystem II reaction center psb28 protein OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psb28 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.168e-27 Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF +G DE +P+V+LT+SR G G A F F+ P + D G DITG Y+IDEEG + + +V KFVNGRP +EA Y+M+S +EW+RF+RFMERYA +N L F K Sbjct: 4 IQFSRGLDEEVIPEVRLTRSRTGDTGTATFIFTNPKILDQ-GTTEDITGMYLIDEEGEIITREVKGKFVNGRPEGVEAVYVMKSAQEWERFIRFMERYAQENDLGFSK 110 The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bpback to top |