CV712180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP4 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psb28 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.281e-24 Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = -1 Query: 273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596 IQF++G +E VPDV+LT+++DG+ G A+F F P + +I G YM+DEEG + + +V+AKF+NG+ + IEA Y +RS EWDRF+RFM RYA +GL F K Sbjct: 4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLVQEGNL--EIMGMYMVDEEGEIVTREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFMNRYAESHGLGFNK 109
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPX (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH8102) GN=psb28 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 9.538e-24 Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = -1 Query: 279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605 K +IQF +G DE VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG + + +++ KFVNG S +EA Y +S ++++RFMRF +RYA NGL + Sbjct: 3 KASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMRFAQRYAEANGLGY 110
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM3 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9303) GN=psb28 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.246e-23 Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = -1 Query: 279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596 IQFI+G DE VPD+KLT+S DG G A+F F +P + G ITG +M+DEEG L + +V+A+FVNG+PS +E YI +S +++RFMRF +RYA NGL + Sbjct: 10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELVTREVNARFVNGQPSALEVTYIWKSEEDFERFMRFAKRYAACNGLGY 114
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNSC (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9605) GN=psb28 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.627e-23 Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = -1 Query: 279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605 K IQF +G +E VPD++LT+SRDG G A F F +P+ + +GDITG +M+DEEG + + +V+ KFVNG S +EA Y +S ++++RFMRF +RYA+ NGL + Sbjct: 3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQRYADANGLGY 110
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROMM (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9313) GN=psb28 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23 Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = -1 Query: 279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596 IQF +G DE VPD+KLT+S DG G A+F F +P + G ITG +MIDEEG L + +V+A+FVNG+PS +E YI +S +++RFMRF +RYA NGL + Sbjct: 10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELVTREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKRYAACNGLGY 114
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM9 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9312) GN=psb28 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23 Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GTDE VP+++LT+S+DG++G A+F F +P S + G+ITG MID EG + + +V KFV+G P +EA YI +S ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEILTREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS3 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9311) GN=psb28 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.055e-22 Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = -1 Query: 279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605 K IQF++G DE VPD+++T+SRDG G AIF F +P + E+ + ITG +M+DEEG L + +V+ KFVNG+ S +EA Y +S ++++RFMRF +RYA+ +GL + Sbjct: 6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEEGMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQRYADSSGLGY 113
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS9 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9902) GN=psb28 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22 Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = -1 Query: 279 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 599 +IQF +G DE VPD++LT+SRDG G A F F +P + G+I G +M+DEEG + + +V+ KFVNG PS +EA Y ++ +++RFMRF +RYA+ NGL + Sbjct: 9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEMVTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQRYADSNGLGY 114
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM2 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9215) GN=psb28 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22 Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG + + +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM0 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9301) GN=psb28 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22 Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG + + +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116 The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bpback to top |