CV712180

Overview
NameCV712180
Unique NameCV712180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712180_ssr738 microsatellite CV712180_ssr738:738..747. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2912 contig Csv1_Contig2912:21..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_CYAP4 (Photosystem II reaction center psb28 protein OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psb28 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.281e-24
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = -1
Query:  273 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVK 596
            IQF++G +E  VPDV+LT+++DG+ G A+F F  P +        +I G YM+DEEG + + +V+AKF+NG+ + IEA Y +RS  EWDRF+RFM RYA  +GL F K
Sbjct:    4 IQFVRGVNEGVVPDVRLTRAKDGNTGRAVFYFDNPQLVQEGNL--EIMGMYMVDEEGEIVTREVNAKFINGKATAIEAIYTIRSAPEWDRFIRFMNRYAESHGLGFNK 109          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNPX (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain WH8102) GN=psb28 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.538e-24
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = -1
Query:  279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605
            K +IQF +G DE  VPD++LT+SRDG  G A F F +P+   +   +GDITG +M+DEEG + + +++ KFVNG  S +EA Y  +S ++++RFMRF +RYA  NGL +
Sbjct:    3 KASIQFFRGVDEPVVPDIRLTRSRDGLTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREINGKFVNGTASALEAVYSWKSVQDFERFMRFAQRYAEANGLGY 110          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM3 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9303) GN=psb28 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.246e-23
Identity = 54/106 (50.94%), Postives = 74/106 (69.81%), Query Frame = -1
Query:  279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596
            IQFI+G DE  VPD+KLT+S DG  G A+F F +P +       G ITG +M+DEEG L + +V+A+FVNG+PS +E  YI +S  +++RFMRF +RYA  NGL +
Sbjct:   10 IQFIRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMLDEEGELVTREVNARFVNGQPSALEVTYIWKSEEDFERFMRFAKRYAACNGLGY 114          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNSC (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9605) GN=psb28 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.627e-23
Identity = 52/109 (47.71%), Postives = 76/109 (69.72%), Query Frame = -1
Query:  279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605
            K  IQF +G +E  VPD++LT+SRDG  G A F F +P+   +   +GDITG +M+DEEG + + +V+ KFVNG  S +EA Y  +S ++++RFMRF +RYA+ NGL +
Sbjct:    3 KAAIQFFRGVNEPVVPDIRLTRSRDGRTGQATFRFEQPAAI-APETMGDITGMWMVDEEGEMVTREVNGKFVNGTASALEAVYSWKSEQDFERFMRFAQRYADANGLGY 110          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROMM (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9313) GN=psb28 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 54/106 (50.94%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  279 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 596
            IQF +G DE  VPD+KLT+S DG  G A+F F +P +       G ITG +MIDEEG L + +V+A+FVNG+PS +E  YI +S  +++RFMRF +RYA  NGL +
Sbjct:   10 IQFTRGVDEPVVPDIKLTRSSDGRTGRALFVFDQPEIMAPETWAG-ITGMFMIDEEGELVTREVNARFVNGKPSALEVTYIWKSEADFERFMRFAKRYAACNGLGY 114          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM9 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9312) GN=psb28 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = -1
Query:  270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596
            IQF +GTDE  VP+++LT+S+DG++G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI +S  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTSGQALFQFEKPQALSSITD-GEITGMRMIDAEGEILTREVKVKFVDGEPIFLEAVYIWKSTSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS3 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9311) GN=psb28 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.055e-22
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = -1
Query:  279 KPTIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGD-ITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 605
            K  IQF++G DE  VPD+++T+SRDG  G AIF F +P     + E+ + ITG +M+DEEG L + +V+ KFVNG+ S +EA Y  +S ++++RFMRF +RYA+ +GL +
Sbjct:    6 KAVIQFLRGVDEPVVPDIRVTRSRDGRTGQAIFVFEQPEAL--APEVMEAITGMFMLDEEGMLVTREVNGKFVNGKASALEATYTWKSEQDFERFMRFAQRYADSSGLGY 113          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNS9 (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain CC9902) GN=psb28 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.377e-22
Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = -1
Query:  279 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQF 599
            +IQF +G DE  VPD++LT+SRDG  G A F F +P    +    G+I G +M+DEEG + + +V+ KFVNG PS +EA Y  ++  +++RFMRF +RYA+ NGL +
Sbjct:    9 SIQFFRGVDEPVVPDIRLTRSRDGRTGQATFVFEQPQAL-APETFGNIGGMWMVDEEGEMVTREVNGKFVNGIPSALEATYTWKTEEDFERFMRFAQRYADSNGLGY 114          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM2 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9215) GN=psb28 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.799e-22
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTKEVKVKFVDGEPIYLEAVYIWKNSSDFDRFMRFANSYAKSNGLGYSEK 116          
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM0 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9301) GN=psb28 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = -1
Query:  270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596
            IQF +GTDE  VP+++LT+S+DG+ G A+F F +P    S  + G+ITG  MID EG + + +V  KFV+G P  +EA YI ++  ++DRFMRF   YA  NGL + +K
Sbjct:    9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDSEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116          
The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PSB28_CYAP44.281e-2449.07Photosystem II reaction center psb28 protein OS=Cy... [more]
PSB28_SYNPX9.538e-2447.71Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROM31.246e-2350.94Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNSC1.627e-2347.71Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROMM2.775e-2350.94Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROM98.074e-2347.71Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_SYNS31.055e-2247.27Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_SYNS91.377e-2246.73Photosystem II reaction center psb28 protein OS=Sy... [more]
PSB28_PROM21.799e-2246.79Photosystem II reaction center psb28 protein OS=Pr... [more]
PSB28_PROM04.007e-2246.79Photosystem II reaction center psb28 protein OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A14_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bp
CCCTTTTTTTTTTGGGAAAAACAGATGATTAATTCATTAAGAGAAGTTCA
AGAACACGGACCATCACCTTGCATGTACATAATGAAGGGAAGAAAATCGA
ACATCAGTAGCAGCAGCAAAAATATGTTGAAGAGAAGAGAGCATAAAGGT
TTTTGCATCAAACTTAAATGGCTGTCAAGCAAAGCCTTCACCATTTGCCT
GACCAAATTACACAAAACCAAAGATTTAATAGGGTAAAGCAAAGCAAGGA
GAAGAAAAAAAATGCCTCATTTCTTGACAAATTGCAAGCCATTCTGATTA
GCATACCGCTCCATGAACCTCATGAACCTATCCCACTCTCGGGGAGACCG
CATGATATACTTTGCTTCAATCCTAGAAGGTCTCCCATTGACAAATTTGG
CACTTACATCAACTGATTGAAGAGTTCCCTCCTCATCAATCATGTAAAAT
CCGGTGATATCACCAATTTCACCGGACGAGTCAAAAACGGAGGGTTCACT
AAAACTGAATATGGCCATACCGTTTGAACCATCTCTTGATTTTGTTAGCT
TCACATCCGGAACTGTCAATTCATCAGTTCCTTGGATGAACTGAATTGTT
GGTTTCACCGCCATCGTTATGGGTCCAGATACCTTAGAATTTCGTGTTAC
CAGGGACAAACGCATACGAGGCATATGTACAGATTGGCCGTTGAATGGTG
ATTGTGCACTTCCATGCACAGCCCATGTTACAATACCAGAGAGAGAGGGA
GAGCGGGATTGTGGGTGCCAACAGTGTGAGATTGGAGAGGCTAATGCAAG
AGACCGCAGAGCTGCCATTGCACAAAGACACTGAAGCAGAGACGGAGTCG
GAGAAAGAAGGAGGTAGCCAAA
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