CV712180
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROMS (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain AS9601) GN=psb28 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.234e-22 Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GTDE VP+++LT+S+DG+ G A+F F +P S + G+ITG MID EG + + +V KFV+G P +EA YI ++ ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTDEPVVPEIRLTRSKDGTTGQALFLFEKPQALSSITD-GEITGMRMIDTEGEILTREVKVKFVDGEPIFLEAVYIWKNTPDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROMP (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psb28 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.166e-21 Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GTDE VP+++LT+ DG+ G AIF F +P S + G+ITG MID EG + + +V KFV+G P +E YI ++ ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTDEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSVAD-GEITGMRMIDAEGEILTREVKVKFVDGEPMFLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_PROM5 (Photosystem II reaction center psb28 protein OS=Prochlorococcus marinus (strain MIT 9515) GN=psb28 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.166e-21 Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = -1 Query: 270 IQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERYANQNGLQFVKK 596 IQF +GT+E VP+++LT+ DG+ G AIF F +P S E G+ITG MID EG + + +V KFV+G P +E YI ++ ++DRFMRF YA NGL + +K Sbjct: 9 IQFYEGTNEPVVPEIRLTRGNDGTTGQAIFIFEKPQALSSITE-GEITGMRMIDSEGEIMTREVKVKFVDGEPMYLEGTYIWKTKSDFDRFMRFANSYAKSNGLGYSEK 116
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJB (Photosystem II reaction center psb28 protein OS=Synechococcus sp. GN=psb28 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -1 Query: 285 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 599 +I+F G E+ V++ KS+ G+ G AIF F D + +I G MIDEEG L + ++ AKF+NG +E Y M + EWDRF+RFMER+ ANQ G+ Sbjct: 3 SIEFSPGIQEVPT-QVRVLKSKTGNRGSAIFRFE-----DLKSDTQNILGMRMIDEEGELTTRNIRAKFLNGEFKALEVTYDMETEAEWDRFLRFMERFSAANQMGM 103
BLAST of CV712180 vs. ExPASy Swiss-Prot
Match: PSB28_SYNJA (Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=psb28 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.851e-14 Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = -1 Query: 285 TIQFIQGTDELTVPDVKLTKSRDGSNGMAIFSFSEPSVFDSSGEIGDITGFYMIDEEGTLQSVDVSAKFVNGRPSRIEAKYIMRSPREWDRFMRFMERY--ANQNGL 599 TI+F G E+ V+L KS+ G G AIF F E + I G MIDEEG L + ++ AKF+NG +E Y M + EW+RF+RFMER+ ANQ G+ Sbjct: 3 TIEFSPGIPEVPT-QVRLLKSKTGKRGSAIFRFEE-----LKSDTQSILGMRMIDEEGELTTRNIKAKFLNGEFKALEVIYDMETEAEWERFLRFMERFSAANQMGM 103 The following BLAST results are available for this feature:
BLAST of CV712180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712180 ID=CV712180; Name=CV712180; organism=Citrus sinensis; type=EST; length=872bpback to top |