CV712178

Overview
NameCV712178
Unique NameCV712178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2911 contig Csv1_Contig2911:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.550e-14
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            +RGVRRRPWGK+AAEIRDP+R G R+WLGTF+T            F LRG  AILNFP E
Sbjct:   20 FRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            YRGVR+RPWGKYAAEIRD  R G RVWLGTF+T            F +RG +AILNFP E
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.511e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            YRGVR+RPWGK+AAEIRD TR G+RVWLGTFD             F  +GS A LNFP+E
Sbjct:   86 YRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVE 145          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 45/102 (44.12%), Postives = 54/102 (52.94%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL--------EAGKCDS-----NAAVARECDSSAEAGACETKRK 786
            H+RGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RGSKA  NFPL        + G+ DS         ARE        AC  +RK
Sbjct:   32 HFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDGGENDSYVNRTTVTTAREMTRQRFPFACHRERK 132          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE-AGKCDSNAAVARECDSSAEA 762
            Y+G+RRRPWG++AAEIRDP  +GVRVWLGTF+T             ++RG+KA LNFP E +GK  + A   ++ + + EA
Sbjct:   25 YKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEA 104          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            YRG+R+RPWGK+AAEIRDP R+GVRVWLGTF+T             Q+RG KA LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAG 765
            HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RG KA  NFPL +    ++ +   E  SS E G
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSENQSTSHSSTME-SSSGETG 105          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            +RGVR+RPWGK+AAEIRDP+RR VRVWLGTFDT             QLRG  A LNFP
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDS 720
            YRG+R+RPWGK+AAEIRDP R G R+WLGTF T             ++RGSKA +NFP E  K +S
Sbjct:  125 YRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANS 189          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEA 705
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +GSKA LNFP  A
Sbjct:   91 HYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
The following BLAST results are available for this feature:
BLAST of CV712178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF98_ARATH1.550e-1461.67Ethylene-responsive transcription factor ERF098 OS... [more]
ERF95_ARATH2.025e-1461.67Ethylene-responsive transcription factor ERF095 OS... [more]
ERF93_ARATH4.511e-1460.00Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF80_ARATH2.924e-1344.12Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF73_ARATH2.924e-1348.15Ethylene-responsive transcription factor ERF073 OS... [more]
RAP23_ARATH4.988e-1362.07Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF4_NICSY6.514e-1348.78Ethylene-responsive transcription factor 4 OS=Nico... [more]
CRF1_ARATH8.508e-1363.79Ethylene-responsive transcription factor CRF1 OS=A... [more]
RA212_ARATH2.475e-1254.55Ethylene-responsive transcription factor RAP2-12 O... [more]
EF115_ARATH2.475e-1256.45Ethylene-responsive transcription factor ERF115 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712178 ID=CV712178; Name=CV712178; organism=Citrus sinensis; type=EST; length=792bp
AACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGACACAGCTTG
CTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCGAGTTTATCG
AGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTTAGTTCGAGT
TTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTCTGCATCTTC
AGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATGAATCCAAAC
CTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACTTGCTCTGAA
TTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAATCCAATCGCA
ACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAATATCTCCAA
ATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATCTCAGTGCCT
AAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAAGGCCAAACC
TGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGAGGCCGTGGG
GAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGCGTACGTGTC
TGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGCGTACGACCG
TGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCTCAACTTTCCTCTTG
AAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAGAGAGTGTGACTCG
AGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGAGGGAC
back to top