CV712178

Overview
NameCV712178
Unique NameCV712178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2911 contig Csv1_Contig2911:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +GSKA LNFP
Sbjct:   89 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            +YRGVR+RPWGK+AAEIRDP  +  RVWLGTFDT            F+ RG KA LNFP
Sbjct:   69 NYRGVRQRPWGKWAAEIRDP-NKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.222e-12
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDS 750
            YRG+R+RPWGK+AAEIRDP+ +GVRVWLGTF T             ++RG KA LNFP        N  V  E D+
Sbjct:   50 YRGIRQRPWGKWAAEIRDPS-KGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP--------NTQVEEEADT 116          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS-KAILNFPLE 702
            YRGVR+RPWGK+AAEIRD TR GVRVWLGTF T             ++RG+ KA  NF LE
Sbjct:  110 YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +G+KA LNFP
Sbjct:   38 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            YRGVR+RPWGK+AAEIRDP  R  RVWLGTFDT             + RG+KA LNFP
Sbjct:   77 YRGVRQRPWGKWAAEIRDP-HRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG 708
            YRGVR+RPWGK+AAEIRDP  +  RVWLGTF+T             + RGSKA LNFP   G
Sbjct:   61 YRGVRQRPWGKWAAEIRDP-HKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAG 765
            +RGVR+RPWG++AAEIRDPT RG RVWLGT+DT             +L+G  A+ NFP+      +      E +S A+ G
Sbjct:   98 FRGVRQRPWGRWAAEIRDPT-RGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGG 177          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RG KA  NFP
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 699
            YRGVRRRPWG+YAAEIRDP ++  RVWLG+F+T             + RGSKA  NFPL
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
The following BLAST results are available for this feature:
BLAST of CV712178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EF114_ARATH2.475e-1257.63Ethylene-responsive transcription factor ERF114 OS... [more]
EF112_ARATH2.475e-1259.32Ethylene-responsive transcription factor ERF112 OS... [more]
ERF71_ARATH4.222e-1250.00Ethylene-responsive transcription factor ERF071 OS... [more]
ERF91_ARATH5.514e-1259.02Ethylene-responsive transcription factor ERF091 OS... [more]
EF113_ARATH5.514e-1255.93Ethylene-responsive transcription factor ERF113 OS... [more]
EF110_ARATH5.514e-1260.34Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH7.202e-1256.45Ethylene-responsive transcription factor RAP2-6 OS... [more]
PTI6_SOLLC7.202e-1244.44Pathogenesis-related genes transcriptional activat... [more]
ERF4_TOBAC7.202e-1257.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF77_ARATH9.406e-1257.63Ethylene-responsive transcription factor 10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712178 ID=CV712178; Name=CV712178; organism=Citrus sinensis; type=EST; length=792bp
AACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGACACAGCTTG
CTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCGAGTTTATCG
AGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTTAGTTCGAGT
TTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTCTGCATCTTC
AGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATGAATCCAAAC
CTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACTTGCTCTGAA
TTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAATCCAATCGCA
ACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAATATCTCCAA
ATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATCTCAGTGCCT
AAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAAGGCCAAACC
TGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGAGGCCGTGGG
GAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGCGTACGTGTC
TGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGCGTACGACCG
TGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCTCAACTTTCCTCTTG
AAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAGAGAGTGTGACTCG
AGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGAGGGAC
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