CV712178

Overview
NameCV712178
Unique NameCV712178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2911 contig Csv1_Contig2911:1..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            YRG+R+RPWGK+AAEIRDP R+G R WLGTFDT             ++RG+KA +NFP E
Sbjct:  128 YRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  520 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT              LRG KA  NFP
Sbjct:   11 HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RG+KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKS-RVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNF---PLEAGKCDSNAAVARECDSSAE 759
            +RG+R+RPWGK+AAEIRDP R+GVRVWLGTF++             ++RG KA +NF   P  A K  + +  A+   SS E
Sbjct:  120 FRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVE 200          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.095e-11
Identity = 39/82 (47.56%), Postives = 48/82 (58.54%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGA 768
            YRGVR+RPWGK+AAEIRDP +R  RVWLGTF+T               RG +A LNFP        ++ VA + D  A+A A
Sbjct:  136 YRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD-DIGAKASA 215          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.097e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT               RG+KA  NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 702
            YRGVR+RPWG++AAEIRDP ++  RVWLGTFD+              LRG KA  NFP++
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKS-RVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of CV712178 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  523 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 696
            YRGVR+RPWGK+AAEIRDP  +  RVWLGTFD              + RG+KA LNFP
Sbjct:  185 YRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP 241          
The following BLAST results are available for this feature:
BLAST of CV712178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RAP22_ARATH1.228e-1156.67Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF81_ARATH1.228e-1159.32Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH1.604e-1156.90Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF1_ORYSJ2.095e-1146.34Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF109_ARATH2.095e-1147.56Ethylene-responsive transcription factor ERF109 OS... [more]
ERF78_ARATH6.097e-1156.90Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF83_ARATH7.963e-1153.33Ethylene-responsive transcription factor 7 OS=Arab... [more]
ABR1_ARATH7.963e-1156.90Ethylene-responsive transcription factor ABR1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A12_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712178 ID=CV712178; Name=CV712178; organism=Citrus sinensis; type=EST; length=792bp
AACTCTTCAATATTTTTAAGATTCAAAAACTCTATAAGGGACACAGCTTG
CTTAGTTGCCATGGCTACACCAATTGAAAAATCAGCGCTCGAGTTTATCG
AGCAACATTTGTTCGGCGAAAATTCTCCTATTGCGGGATTTAGTTCGAGT
TTGTCGAGCGACACTTGCTCGCAATCGCAAACGTCCAGCTCTGCATCTTC
AGATCGTAGTTTCTTCAACGATGCCGTTTTCTTCGACTATGAATCCAAAC
CTCAAATCATTGATCTTGTTACACCGCAACCCACTAATACTTGCTCTGAA
TTGACTAACGATTTCTTTGAATTTGACATTAGACCTCAAATCCAATCGCA
ACCGAGCAATTGTAGCTCGGAATTCGAACCCAAGCCTAAAATATCTCCAA
ATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAAAATCTCAGTGCCT
AAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAAGCAAGGCCAAACC
TGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGACGGAGGCCGTGGG
GAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAGAGGCGTACGTGTC
TGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTAGGGCGTACGACCG
TGCCGCTTTCCAGCTACGCGGCTCGAAAGCGATCCTCAACTTTCCTCTTG
AAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAGAGAGTGTGACTCG
AGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGAGGGAC
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