CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ EED+ + +LV K+GP+ WS+I+K + GR GK CR RW N L+P+V+  ++T EED  I  AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct:   88 IKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.522e-32
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +KGPW+ EED+ + +LV K+GP+ WS+I+K + GR GK CR RW N L+P V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST+KRK
Sbjct:   85 VKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 63/117 (53.85%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 468
            D +KGPW+ EED+ + +LV+K+G + W+LI+K + GR GK CR RW N L+P+V+  ++T EED +I  AH   GN+WA IA+LL GRTDNA+KNHWNST+KRK      + G FLN
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK-----VDTGGFLN 191          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.289e-31
Identity = 59/101 (58.42%), Postives = 79/101 (78.22%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KGPW+ EED+ + + VQK+GP+ WS I+K + GR GK CR RW N L+P+V+  ++T EED +I +AH R GN+WA IA+LL GRTDNA+KNHWNST++RK
Sbjct:   21 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 121          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            D +KGPW+ EED+ + +LV+K+G + W+LI+K + GR GK CR RW N L+P+V+   +T EED +I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 58/104 (55.77%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  118 DRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            D +KGPW+ EED+ + +LV+K+G + W+LI+K + GR GK CR RW N L+P+V+   +T EED +I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:   80 DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.354e-31
Identity = 57/105 (54.29%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            +KGPWS EED  +  LV+K+GP+ WS IS+ +PGR GK CR RW N L+P +   A+T EE+  +IRAH  +GNKWA + + L GR+DN+IKNHWNS++K+K  S
Sbjct:   86 VKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDS 190          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.236e-30
Identity = 56/102 (54.90%), Postives = 78/102 (76.47%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            IKGPW+ +ED+ + +LV+  GP+ W+LI++ + GR GK CR RW N L+P ++  A+T +EDE+I +AH   GN+WA IA+ L GRTDNAIKNHWNST++RK
Sbjct:  135 IKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 61/148 (41.22%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTT 567
            +KG W+ +ED+ + +LV+ +GP+ WS I+  + GR GK CR RW N L+P ++  A++ EED++I   HA  GNKWA IA+ L GRTDNAIKNHWNS++KR     ++ N + L  +  +    +   Q     K  +++ S +P TT
Sbjct:  200 VKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR-----VSNNNVHLKSHAIEHSLSSQDNQD--SPKSIITSSSPIPTTT 340          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 56/105 (53.33%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  121 RIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 435
            + KG W+ EEDE L+ LV  HG + W  I+  +  R+G+ CR RW NQL P ++  A+T EED +I+ AH+++GNKWA I++LL GRT+ AIKNHWNST+KRK S
Sbjct:  755 KAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLS 859          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB_XENLA1.166e-3259.80Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBA_XENLA1.522e-3258.82Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBB_CHICK2.597e-3253.85Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYB_AVIMB1.289e-3158.42Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBB_MOUSE2.198e-3155.77Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN2.198e-3155.77Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MB3R1_ARATH8.354e-3154.29Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
MYB_DROME9.236e-3054.90Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MYBA_DICDI7.819e-2941.22Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI1.742e-2853.33Myb-like protein AA OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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