CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query:  124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST-----LKRKCSS 438
            +KG W+ EED  L QLV+K+G R WS I++ +PGR GK CR RW N L P ++   ++ EED ++I  H   GNKWA IA+ L GRT+N+IKNHWN+T      KRKC S
Sbjct:  216 VKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426
            KGPW+  ED  L   V+KHG  NW+ + K+    R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426
            KGPW+  ED  L   V+KHG  NW+ + K+    R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 468
            KG WSPEED  L Q +  +G   WS ++K+    R GKSCRLRW N L P ++  AF+P+E+++IIR H+  GN+W+ IA  L GRTDN IKN WNST+K++   M   + +  N
Sbjct:   20 KGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINN 134          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT-ENG 456
            KGPW+PEED  L   +Q+HGP NW    ++IP  +G     KSCRLRW N L P ++   FT  E++MII   A  GN+WA IA  L  RTDN IKN+WN+ LK+K   + + ENG
Sbjct:   14 KGPWTPEEDIILVSYIQEHGPGNW----RAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG 125          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG WSPEEDE L   + +HG   WS + K + G  R GKSCRLRW N L P ++  AF+ +E+ +II  HA  GN+W+ IA  L GRTDN IKN WNS LK+K
Sbjct:   14 KGLWSPEEDEKLLNYITRHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVT 564
            KGPW+PEED+ L   +Q+HG  NW  + K     R GKSCRLRW N L P ++   F+ EE++ II  H   GN+W+ IA  L GRTDN IKN W++ LK++  +            G+ A  G    ++P   K+  +A ++ P +
Sbjct:   14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQ--------GGHVAASGGKKHKKPKSAKKPAAAAAAPPAS 152          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            KG W+ EED+ L   ++KHG   W  + ++    R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 54/102 (52.94%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            +G W+P+ED  L   +QKHG  NW  + K     R GKSCRLRW N L P ++   FT EE+E IIR H   GNKW+ IA  L GRTDN IKN WN+ LK+K
Sbjct:   16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KGPW+ +ED  L   V+  G R W  ++K S   R+GKSCRLRW N L P ++H   +P+E+ +II  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB98_ARATH1.129e-2751.82Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ2.354e-2552.48Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI2.354e-2552.48Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB46_ARATH3.075e-2547.83Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB06_ANTMA1.993e-2449.14Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB86_ARATH3.400e-2453.40Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB4_ORYSJ4.440e-2438.78Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB3_ARATH5.799e-2450.48Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB1_MAIZE5.799e-2452.94Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYBA1_ORYSJ1.687e-2349.02Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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