CV712172
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27 Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 124 IKGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST-----LKRKCSS 438 +KG W+ EED L QLV+K+G R WS I++ +PGR GK CR RW N L P ++ ++ EED ++I H GNKWA IA+ L GRT+N+IKNHWN+T KRKC S Sbjct: 216 VKGQWTAEEDRVLIQLVEKYGLRKWSHIAQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25 Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426 KGPW+ ED L V+KHG NW+ + K+ R GKSCRLRW N L P ++ AFT EE+ +II+ H++ GNKWA +A L GRTDN IKN+WN+ +KR Sbjct: 42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25 Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426 KGPW+ ED L V+KHG NW+ + K+ R GKSCRLRW N L P ++ AFT EE+ +II+ H++ GNKWA +A L GRTDN IKN+WN+ +KR Sbjct: 42 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 468 KG WSPEED L Q + +G WS ++K+ R GKSCRLRW N L P ++ AF+P+E+++IIR H+ GN+W+ IA L GRTDN IKN WNST+K++ M + + N Sbjct: 20 KGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINN 134
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24 Identity = 57/116 (49.14%), Postives = 73/116 (62.93%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT-ENG 456 KGPW+PEED L +Q+HGP NW ++IP +G KSCRLRW N L P ++ FT E++MII A GN+WA IA L RTDN IKN+WN+ LK+K + + ENG Sbjct: 14 KGPWTPEEDIILVSYIQEHGPGNW----RAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG 125
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24 Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG--RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429 KG WSPEEDE L + +HG WS + K + G R GKSCRLRW N L P ++ AF+ +E+ +II HA GN+W+ IA L GRTDN IKN WNS LK+K Sbjct: 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPK-LAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 4.440e-24 Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVT 564 KGPW+PEED+ L +Q+HG NW + K R GKSCRLRW N L P ++ F+ EE++ II H GN+W+ IA L GRTDN IKN W++ LK++ + G+ A G ++P K+ +A ++ P + Sbjct: 14 KGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQ--------GGHVAASGGKKHKKPKSAKKPAAAAAAPPAS 152
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24 Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438 KG W+ EED+ L ++KHG W + ++ R GKSCRLRW N L P ++ FT EEDE+II+ H+ GNKW+ IA L GRTDN IKN+WN+ +KRK S Sbjct: 14 KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24 Identity = 54/102 (52.94%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429 +G W+P+ED L +QKHG NW + K R GKSCRLRW N L P ++ FT EE+E IIR H GNKW+ IA L GRTDN IKN WN+ LK+K Sbjct: 16 RGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.687e-23 Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429 KGPW+ +ED L V+ G R W ++K S R+GKSCRLRW N L P ++H +P+E+ +II HAR+GN+W+ IAR L GRTDN IKN+W + +++K Sbjct: 10 KGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111 The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 73
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bpback to top |