CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KGPW+ +ED  L   V   G R W  ++K S   R+GKSCRLRW N L P ++    TP+E+ +++  HA++GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED+ L   ++ HG   W  + +S    R GKSCRLRW N L P ++   FT EED++II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK
Sbjct:   14 KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.373e-23
Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIPG-RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 438
            KG W+ EED+ L   ++ HG   W  + K+    R GKSCRLRW N L P ++   F+ EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK +S
Sbjct:   14 KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTS 118          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 441
            KGPW PEED+ L   + ++G  NW  + K     R GKSCRLRW N L P +    F+  E+  I+R HA  GNKW+ IA  L GRTDN IKN+WN+ +++K   M
Sbjct:   15 KGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.428e-22
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 1
Query:  103 NRREVDRIKGPWSPEEDEALQQLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 426
            N ++V+  KGPW+ EED  L   +  HG   W+ +++S    R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN+W + +++
Sbjct:    7 NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQK 115          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLISK-SIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KGPW+ +ED  L   V+  G R W  I+K S   R+GKSCRLRW N L P ++    +P E+ +I+  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   10 KGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWSLIS-KSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG WSPEEDE L+  +  +G   W+ +  K+   R+GKSCRLRW N L P ++    + EE+E I+  H+  GNKW+ IA+ L GRTDN IKN+W+S LK+K
Sbjct:   12 KGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWS-LISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED  L   V  HG   W+ ++ K+   R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.436e-22
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPRNWS-LISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 429
            KG W+ EED  L   V  HG   W+ ++ K+   R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   16 KGLWTVEEDNILMDYVLNHGTGQWNRIVRKTGLKRCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.182e-22
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query:  127 KGPWSPEEDEALQQLVQKHGPR-NW-SLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 453
            +GPWSPEED  L+  ++K+G   NW S   K+   R GKSCRLRW N L P ++H  F+ EED +I    A  G++W+ IA  L GRTDN IKN+WN+ L++K  S  +++
Sbjct:   14 RGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDS 124          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
MYB59_ARATH8.373e-2346.08Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB32_ARATH8.373e-2350.00Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB1_HORVU8.373e-2348.57Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYB39_ARATH1.428e-2247.17Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA1.428e-2244.95Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYBA2_ORYSJ2.436e-2248.04Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
LAF1_ARATH2.436e-2249.02Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
GL1_ARATH2.436e-2248.04Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.436e-2248.04Trichome differentiation protein GL1 OS=Arabidopsi... [more]
RAX1_ARATH3.182e-2246.85Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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