CV712172

Overview
NameCV712172
Unique NameCV712172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:32..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 38/94 (40.43%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  136 WSPEEDEALQQLVQKHGPRNWSLISKSIPG---RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 408
            W PEED  L   V+++GPR WSL+S+ +     R  KSC  RW N L P ++  + T +E  ++IR  A+ GNKW  IA  + GRT   +   W
Sbjct:   12 WRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 105          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  136 WSPEEDEALQQLVQKHGPRNWSLISKSIP---GRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHW 408
            WS EED  L+  V++ GPR W L+S+ +     R  KSC  RW N L P ++  + T EE  ++IR   + GNKW  IA  + GRT   +   W
Sbjct:    7 WSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of CV712172 vs. ExPASy Swiss-Prot
Match: CEF1_CANAL (Pre-mRNA-splicing factor CEF1 OS=Candida albicans GN=CEF1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 32/82 (39.02%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  130 GPWSPEEDEALQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLN 375
            G W+  EDE L+  +QK+G   W  IS  +P +S K  + RW   LSP +    +T EEDE ++  H  F N+W +I+ +LN
Sbjct:   10 GVWTNVEDEILKAAIQKYGIYQWERISSLLPKKSAKQVKARWVEYLSPLLNKTDWTKEEDEKLLNLHKIFPNQWRSISNILN 91          
The following BLAST results are available for this feature:
BLAST of CV712172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
RS2_ORYSJ4.165e-1440.43Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
AS1_ARATH3.526e-1339.36Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
CEF1_CANAL5.092e-1239.02Pre-mRNA-splicing factor CEF1 OS=Candida albicans ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712172 ID=CV712172; Name=CV712172; organism=Citrus sinensis; type=EST; length=754bp
AAAAGAACCACCTCTCTCGAAGCTAAAAACTGAAATTCTCTTGCATGATC
AACACCCATTCATTGAAGTTAAATTATTTTTAATTGTTCATTAATGGCGT
TTAATAGAAGAGAAGTGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAA
GACGAAGCCTTACAGCAGCTGGTTCAAAAACACGGCCCAAGAAATTGGTC
TCTAATCAGCAAATCAATTCCCGGAAGATCGGGAAAGTCTTGCCGGCTAC
GGTGGTGCAACCAGCTGTCACCTCAAGTCGAGCACCGAGCGTTCACGCCC
GAAGAAGACGAGATGATCATACGAGCCCACGCTCGGTTTGGCAACAAGTG
GGCCACCATCGCGCGCCTTCTCAACGGCCGAACCGATAACGCGATTAAGA
ATCACTGGAACTCGACCTTAAAACGTAAGTGCTCTTCGATGTTGACAGAG
AACGGTATTTTTTTGAATTGTAATGGATACGATGCGGATTTTGGGAATAG
TATTCAGCAACAGCCGTTGAAATTGAAAAGATCGGTGAGTGCGGGATCGA
GTGTGCCCGTGACCACGGGACTTTATATGAGCCCCGGTAGTCCATCGGGA
TCCGACGTCAGCGATTCAAGCGTGCCGGGTTTGTCATCGAATTACAATAT
ATACAAACCCGTGGCGAGATCTGGCGGTATCAATGTGGACGTGAATGTGG
TGCCCGAGCCGGAAACGACGTCGTCGTCTAATGACCCTCCTACTTCATTG
AGTC
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