CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST+KRK
Sbjct:  113 AKHLKGRIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRK 186          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:  114 AKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 7.427e-21
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T EED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:  114 AKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBB_MOUSE (Myb-related protein B OS=Mus musculus GN=Mybl2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+   +T EED +I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:  110 AKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+   +T EED +I  AH   GN+WA IA++L GRTDNA+KNHWNST+KRK
Sbjct:  110 AKHLKGRLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWNSTIKRK 183          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.686e-20
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            +K + GR GK CR RW N L+P+V+  ++T  ED +I  AH R GN+WA IA+LL GRTDN+IKNHWNST++RK
Sbjct:  114 AKHLKGRIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRK 187          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 49/117 (41.88%), Postives = 70/117 (59.83%), Query Frame = -2
Query:  503 IPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVTT 853
            + GR GK CR RW N L+P ++  A++ EED++I   HA  GNKWA IA+ L GRTDNAIKNHWNS++KR     ++ N + L  +  +    +   Q     K  +++ S +P TT
Sbjct:  231 LKGRMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR-----VSNNNVHLKSHAIEHSLSSQDNQD--SPKSIITSSSPIPTTT 340          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.072e-19
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = -2
Query:  635 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCS 844
            R+G+ CR RW NQL P ++  A+T EED +I+ AH+++GNKWA I++LL GRT+ AIKNHWNST+KRK S
Sbjct:  790 RNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLS 859          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB_DROME (Myb protein OS=Drosophila melanogaster GN=Myb PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = -2
Query:  641 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 862
            ++ + GR GK CR RW N L+P ++  A+T +EDE+I +AH   GN+WA IA+ L GRTDNAIKNHWNST++RK
Sbjct:  163 ARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK 236          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  632 SKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 862
            S+ +PGR GK CR RW N L+P +   A+T EE+  +IRAH  +GNKWA + + L GR+DN+IKNHWNS++K+K  S
Sbjct:  114 SQHLPGRIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDS 190          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYBA_XENLA7.427e-2160.81Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBA_MOUSE7.427e-2159.46Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN7.427e-2159.46Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]
MYBB_MOUSE3.686e-2058.11Myb-related protein B OS=Mus musculus GN=Mybl2 PE=... [more]
MYBB_HUMAN3.686e-2058.11Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYBA_CHICK3.686e-2058.11Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYBA_DICDI6.287e-2041.88Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI1.072e-1960.00Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYB_DROME1.829e-1956.76Myb protein OS=Drosophila melanogaster GN=Myb PE=1... [more]
MB3R1_ARATH4.075e-1953.25Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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