CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = -2
Query:  602 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLN 844
            R GKSCRLRW N L P ++  AF+P+E+++IIR H+  GN+W+ IA  L GRTDN IKN WNST+K++   M   + +  N
Sbjct:   54 RCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSNLINN 134          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   48 RCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK  S
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  632 IPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNST-----LKRKCSS 853
            +PGR GK CR RW N L P ++   ++ EED ++I  H   GNKWA IA+ L GRT+N+IKNHWN+T      KRKC S
Sbjct:  247 LPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQFSKRKCRS 325          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++   FT EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  644 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 844
            R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   76 RCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.712e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = -2
Query:  644 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 844
            R GKSCRLRW N L P ++  AFT EE+ +II+ H++ GNKWA +A  L GRTDN IKN+WN+ +KR
Sbjct:   76 RCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKR 142          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   F+ EEDE+II+ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK +S
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R+GKSCRLRW N L P ++H   +P+E+ +II  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   44 RTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYB46_ARATH1.549e-1850.62Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB3_ARATH5.885e-1859.15Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB30_ANTMA5.885e-1859.15Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB08_ANTMA1.311e-1757.75Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB98_ARATH1.712e-1751.90Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB4_ARATH1.712e-1758.82Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
GAM1_ORYSJ1.712e-1758.21Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI1.712e-1758.21Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB1_HORVU2.236e-1756.34Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
MYBA1_ORYSJ2.921e-1754.41Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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