CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.921e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++   FT EED++II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.814e-17
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   FT +ED++II+ H+  GNKW+ IA  L GRTDN IKN+WN+ +KRK  S
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++   FT EE+E IIR H   GNKW+ IA  L GRTDN IKN WN+ LK+K
Sbjct:   50 RCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N LSP V+   FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   52 RCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++  AF+ +E+ +II  HA  GN+W+ IA  L GRTDN IKN WNS LK+K
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  596 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM---LTENGIFLNCN 844
            R+GKSCRLRW N L P ++    TP+E+ +++  HA++GN+W+ IAR L GRTDN IKN+W + +++K       ++    F NC+
Sbjct:   43 RTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPTSSFSNCS 128          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++   FT +ED++I++ H+  GNKW+ IA  L GRTDN IKN+WN+ ++RK
Sbjct:   48 RCGKSCRLRWINYLRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.449e-16
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   48 RCGKSCRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.893e-16
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = -2
Query:  611 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGI 844
            R GKSCRLRW N L   ++    TPEE+E++++ H+  GN+W+ IA  L GRTDN IKN+WNS L RK  + + +  I
Sbjct:   48 RCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFIRKPSI 125          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.893e-16
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   50 RCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYB32_ARATH2.921e-1758.82Transcription factor MYB32 OS=Arabidopsis thaliana... [more]
MYB6_ARATH3.814e-1756.34Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB1_MAIZE8.498e-1760.29Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
WER_ARATH1.110e-1654.41Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB86_ARATH1.110e-1657.35Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB48_ARATH1.110e-1643.02Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB38_MAIZE1.110e-1654.41Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB23_ARATH1.449e-1654.41Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYB12_ARATH1.893e-1648.72Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
GL1_ARATH1.893e-1654.41Trichome differentiation protein GL1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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