CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.893e-16
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N LSP V    FT +E+++IIR H   GN+W+ IA+ + GRTDN +KN+WN+ L +K
Sbjct:   50 RCGKSCRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.229e-16
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R+GKSCRLRW N L P ++    TP+E+ +++  HA++GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   44 RTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P + H  FT EED +I    A  G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   49 RCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK 116          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R+GKSCRLRW N L P ++    +P E+ +I+  HAR+GN+W+ IAR L GRTDN IKN+W + +++K
Sbjct:   44 RTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKK 111          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN+WN T  +K
Sbjct:   49 RTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQK 116          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  620 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTE 844
            R GKSCRLRW N L P ++    + +E+E+IIR H   GN+W+ IA  L GRTDN IKNHWNS L+++     T+
Sbjct:   50 RCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQTK 124          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 36/71 (50.70%), Postives = 50/71 (70.42%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++  + +P+E ++IIR H   GN+W+ IA  L GRTDN +KN+WN+ L +K +S
Sbjct:   48 RGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = -2
Query:  629 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 844
            R GKSCRLRW N L P ++    +  E++++I  H+R GN+W+ IA  L GRTDN IKNHWN+ +K+K   M
Sbjct:   48 RCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKM 119          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R+GKSCRLRW N L P ++    + EE+E I+  H+  GNKW+ IA+ L GRTDN IKN+W+S LK+K
Sbjct:   46 RNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.603e-15
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P +     + +E+++IIR H   GN+W+ IA  L GRTDN IKN+WNSTL R+  +
Sbjct:   48 RCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGA 118          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
GL1_ARALY1.893e-1654.41Trichome differentiation protein GL1 OS=Arabidopsi... [more]
MYB59_ARATH3.229e-1650.00Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
RAX2_ARATH5.508e-1655.88Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
MYBA2_ORYSJ5.508e-1651.47Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYB40_ANTMA5.508e-1655.88Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
TT2_ARATH7.194e-1650.67Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB82_ARATH7.194e-1650.70Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
ODO1_PETHY9.395e-1650.00Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
LAF1_ARATH9.395e-1654.41Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYBC_MAIZE1.603e-1552.11Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
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