CV712171

Overview
NameCV712171
Unique NameCV712171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10601 contig Csv1_Contig10601:238..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.603e-15
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = -2
Query:  644 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR 844
            R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN+W + +++
Sbjct:   49 RTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQK 115          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P V+    T +E+++I+R H   GN+W+ IA  + GRTDN IKN+WN+ L++K
Sbjct:   59 RCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  506 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTENGIFLNCNGYDADFGNSIQQQPLKLKRSVSAGSSVPVT 844
            R GKSCRLRW N L P ++   F+ EE++ II  H   GN+W+ IA  L GRTDN IKN W++ LK++  +            G+ A  G    ++P   K+  +A ++ P +
Sbjct:   48 RCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQ--------GGHVAASGGKKHKKPKSAKKPAAAAAAPPAS 152          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.093e-15
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = -2
Query:  629 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSM 844
            R GKSCRLRW N L P +    F+  E+  I+R HA  GNKW+ IA  L GRTDN IKN+WN+ +++K   M
Sbjct:   49 RCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQM 120          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.734e-15
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  617 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLTEN 844
            R GKSCRLRW N L P ++H  F+ EED +I    A  G++W+ IA  L GRTDN IKN+WN+ L++K  S  +++
Sbjct:   49 RCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKKLLSSSSDS 124          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.570e-15
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -2
Query:  632 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSS 844
            R GKSCRLRW N L P ++   F+  E+ +I+  HA  GN+W+ IA  L GRTDN IKN+WN+ LK++  S
Sbjct:   48 RCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRS 118          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.663e-15
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  614 KSIPGRSG-----KSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSMLT-ENG 859
            ++IP  +G     KSCRLRW N L P ++   FT  E++MII   A  GN+WA IA  L  RTDN IKN+WN+ LK+K   + + ENG
Sbjct:   38 RAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG 125          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L P ++H  F+ EE+ +I   +   G++W+ IA  L GRTDN IKN+WN+ LK+K
Sbjct:   49 RCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK 116          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = -2
Query:  611 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKR--KCSSMLTENGI 844
            R+GKSCRLRW N L P V     TPEE  +I+  HA++GN+W+ IA+ L GRTDN IKN W + +++  K S + T + +
Sbjct:   56 RTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSV 135          
BLAST of CV712171 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  641 RSGKSCRLRWCNQLSPQVEHRAFTPEEDEMIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 844
            R GKSCRLRW N L   V+    + EE+++II+ HA  GN+W+ IA  L GRTDN IKN+WNS L R+
Sbjct:   48 RCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
The following BLAST results are available for this feature:
BLAST of CV712171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
MYB05_ANTMA1.603e-1552.24Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB5_ARATH2.093e-1551.47Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB4_ORYSJ2.093e-1537.17Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB39_ARATH2.093e-1551.39Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
RAX1_ARATH2.734e-1548.68Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
MYB2_PHYPA3.570e-1550.70Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB06_ANTMA4.663e-1547.73Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
RAX3_ARATH6.090e-1551.47Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
MYB21_ARATH6.090e-1547.50Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE7.954e-1554.41Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A09_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712171 ID=CV712171; Name=CV712171; organism=Citrus sinensis; type=EST; length=863bp
TTTTTTTTTTTTTTTTTACTCACTAACCAGTCCTTTGCATGGCAACATTC
CTTAAAACCCCATCACCGCCCCCACCACTACCGTTATAACACGCGCCACC
TCTCTGCTGCTCAAGCGCCGCCATGTACGTCCTCACTTCCTGCTTTATCA
TCTCCTGCATCACAGCCATAAACTCTTTACTAAACCCCACTAATCCCTTC
GACCCACTGTCACTACTTACTGGAGCCGGCACCGAAGCTTTTGCGTTCAC
TGCCTGAGTTGACTCACTCACTTTGTTTGAAACTTCTGAGGAGGAATCCA
CACCAGGAAGGGACAGACTCAATGAAGTAGGAGGGTCATTAGACGACGAC
GTCGTTTCCGGCTCGGGCACCACATTCACGTCCACATTGATACCGCCAGA
TCTCGCCACGGGTTTGTATATATTGTAATTCGATGACAAACCCGGCACGC
TTGAATCGCTGACGTCGGATCCCGATGGACTACCGGGGCTCATATAAAGT
CCCGTGGTCACGGGCACACTCGATCCCGCACTCACCGATCTTTTCAATTT
CAACGGCTGTTGCTGAATACTATTCCCAAAATCCGCATCGTATCCATTAC
AATTCAAAAAAATACCGTTCTCTGTCAACATCGAAGAGCACTTACGTTTT
AAGGTCGAGTTCCAGTGATTCTTAATCGCGTTATCGGTTCGGCCGTTGAG
AAGGCGCGCGATGGTGGCCCACTTGTTGCCAAACCGAGCGTGGGCTCGTA
TGATCATCTCGTCTTCTTCGGGCGTGAACGCTCGGTGCTCGACTTGAGGT
GACAGCTGGTTGCACCACCGTAGCCGGCAAGACTTTCCCGATCTTCCGGG
AATTGATTTGCTG
back to top