CV712170

Overview
NameCV712170
Unique NameCV712170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712170_ssr720 microsatellite CV712170_ssr720:720..731. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12317 contig Csv1_Contig12317:290..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV712170 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 61/265 (23.02%), Postives = 110/265 (41.51%), Query Frame = 2 
Query:    2 FYFSINIGALISSSLIVWIQDNAGWGLGFGIPALFMGFAIASFFSGTSLYRFQRPGGSPITRMCQVLVASF--RKWNLEVPNDSTLLYETQDKASAIEGSRKIEHSDELRCLDKAAVVSDAEIKSGDFSNPWILCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTLFVEQGM-----------------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVE 739
            FY+SIN+GA++S  ++ +IQ N  + LG+ IP   +G A   F   T ++  + P GS ++ M ++ + +   + W      D        D+ S   G+   E                                   +   ++L+++ P+  T + +  VY QM + +V QG+                  +     S+TIP A L   +V+ V+  VP+ D++I P+  +        S LQ+M +G+F     +  A V+E
Sbjct:  202 FYWSINLGAVLSLLVVAFIQQNISFLLGYSIPVGCVGLAFFIFLFATPVFITKPPMGSQVSSMLKLALQNCCPQLWQRHSARDRQCARVLADERSPQPGASPQE----------------------------------DIANFQVLVKILPVMVTLVPYWMVYFQMQSTYVLQGLHLHIPNFFPANPANISVALRAQGSSYTIPEAWLLLANVVVVLILVPLKDRLIDPLLLRCKLLP---SALQKMALGMFFGFTSVIVAGVLE 429
The following BLAST results are available for this feature:
BLAST of CV712170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
S15A3_HUMAN2.202e-1223.02Solute carrier family 15 member 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A08_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712170 ID=CV712170; Name=CV712170; organism=Citrus sinensis; type=EST; length=740bp
GTTTTATTTTTCTATCAACATTGGTGCCCTGATATCAAGTAGTCTTATTG
TATGGATCCAAGACAATGCTGGGTGGGGACTAGGATTTGGAATTCCTGCA
TTGTTTATGGGCTTTGCCATTGCAAGTTTCTTTTCAGGAACTTCACTCTA
CAGATTTCAAAGGCCAGGGGGAAGCCCCATTACAAGAATGTGTCAGGTTT
TGGTTGCTTCATTCCGTAAATGGAATTTGGAAGTACCTAATGACAGTACT
CTTCTGTATGAAACTCAAGACAAAGCCTCAGCCATTGAAGGTAGCCGGAA
GATAGAGCACAGCGATGAACTTAGGTGCCTTGACAAAGCTGCTGTAGTTT
CAGATGCTGAGATCAAAAGTGGTGATTTCTCCAATCCTTGGATTCTTTGC
ACTGTAACTCAGGTGGAGGAACTAAAAATTTTGATCCGAATGTTTCCTAT
CTGGGCTACTGGAATTGTCTTTTCTGCTGTATATGCCCAAATGTCTACAT
TGTTTGTGGAACAAGGGATGGTGATGGACACGTCTATTGGTTCTTTCACC
ATTCCTCCTGCCTCTCTCTCAAGTTTTGATGTTATCAGTGTTATTTTCTG
GGTACCTATATATGATAAGATCATTGTCCCAATAGCAAGGAAGTTCACAG
GCAAGGAGAGGGGTTTCTCAGAGTTGCAGCGAATGGGAATTGGCCTCTTT
CTGTCAGTTCTCTGCATGTCTGCTGCTGCTGTGGTTGAGA
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