CV712169

Overview
NameCV712169
Unique NameCV712169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV712169_ssr555 microsatellite CV712169_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13664 contig Csv1_Contig13664:368..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.456e-23
Identity = 66/241 (27.39%), Postives = 130/241 (53.94%), Query Frame = -3
Query:  145 IVFSAVYAQMSTLFVEQGM---VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNVSVP-----ISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPD-----NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 822
            I +  VY QM T +V Q +   +      + T+P A L+ FD + ++  +P+ DK++ P  +K     RG   S L+R+ +G+F  +  + AA ++E  RL + +  ++  Q  +V      ++++WQ+PQY L+G +E+   I  LEF Y  +P +M+            +G+++ S +L +V+       + GW+ +     N+N   L+Y+F+LLA +    +LL+++ + KY+++++
Sbjct:  333 IPYWTVYFQMQTTYVLQSLHLRIPQIFNNNHTLPAAWLTMFDAVLILILIPLKDKLVDPFLKK-----RGLLPSPLKRIAVGMFFVMCSVLAAGILESERLEIVKRDKIQQQIGNVTYYAANLTVWWQLPQYILIGISEIFASIAGLEFAYSAAPKSMQSVIMGLFFFFSGIGSFVGSGLLALVSI-----PQIGWMSNHSDLGNINGCTLNYYFFLLAAVQAATLLLFLIISVKYERQQS 563          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 68/245 (27.76%), Postives = 126/245 (51.43%), Query Frame = -3
Query:  145 IVFSAVYAQMSTLFVEQGM------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGF--SELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIPD-----NLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKA 822
            I +  VY QM T +V Q +      +   +    T P A L+ FD + ++  +P+ DK++ PI      K  G   S L+R+ +G+F  +    AA ++E  RL L +E + ++Q +      +  + I+WQ+PQY L+G +E+   I  LEF Y  +P +M+            +G+++ S +L +V+         GW+       N+N  +L+Y+F+LLA +    +LL+++ + KY ++++
Sbjct:  322 IPYWTVYFQMQTTYVLQSLHLKIPEISSITTNPHTFPAAWLTMFDAVLILLLIPLKDKLVDPIL-----KRNGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLDLVKE-KTINQTIGNVVYYAADLPIWWQVPQYVLIGVSEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSL-----KAIGWMSSHTDFGNINGCYLNYYFFLLAAIQGATLLLFLIVSVKYDRQRS 555          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A3_HUMAN (Solute carrier family 15 member 3 OS=Homo sapiens GN=SLC15A3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.837e-21
Identity = 72/250 (28.80%), Postives = 119/250 (47.60%), Query Frame = -3
Query:  142 VYAQMSTLFVEQGM-----------------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIP-----DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKKAG 807
            VY QM + +V QG+                  +     S+TIP A L   +V+ V+  VP+ D++I P+  +        S LQ+M +G+F     +  A V+E+ RL      E V Q +      + P+SI+WQIPQY L+G +E+   I  LEF Y ++P +M+            +G+ L S ++ +++         GW+       N+N   +D +F+LLAG+     LL+V  A +Y++   G
Sbjct:  329 VYFQMQSTYVLQGLHLHIPNFFPANPANISVALRAQGSSYTIPEAWLLLANVVVVLILVPLKDRLIDPLLLRCKLLP---SALQKMALGMFFGFTSVIVAGVLEMERLHYIHHNETVSQQIGEVLYNAAPLSIWWQIPQYLLIGISEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSSLVALLSL------PGGWLHCPKDFGNINNCRMDLYFFLLAGIQAVTALLFVWIAGRYERASQG 569          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A3_MOUSE (Solute carrier family 15 member 3 OS=Mus musculus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.222e-18
Identity = 64/247 (25.91%), Postives = 119/247 (48.18%), Query Frame = -3
Query:  148 VYAQMSTLFVEQGM----------------VMDTSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIP-----DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 807
            VY QM + +V QG+                ++ +   ++ IP A L   +V  ++  +P+ D +I P+  +        S LQ+M +G+F     +  A V+E  RL+     + V Q +      + P+SI+WQIPQY L+G +E+   I  LEF Y ++P +M+            +G+ L S ++ ++++        GW+       N+N   +D +F+LLAG+     +L++  A +Y++ +
Sbjct:  327 VYFQMQSTYVLQGLHLHIPNIFRTNPNISLLLRSDSSNYRIPEAWLLLANVAVILILIPVKDHLIDPLLLRCKLLP---SSLQKMALGMFFGFTSIIVAGVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGVSEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSGLVALLSF------PGGWMYCPKDFGNINNCQMDRYFFLLAGIEAVTAVLFLWIAGRYERTR 564          
BLAST of CV712169 vs. ExPASy Swiss-Prot
Match: S15A3_RAT (Solute carrier family 15 member 3 OS=Rattus norvegicus GN=Slc15a3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 65/247 (26.32%), Postives = 117/247 (47.37%), Query Frame = -3
Query:  148 VYAQMSTLFVEQGMVMD----------------TSIGSFTIPPASLSSFDVISVIFWVPIYDKIIVPIARKFTGKERGFSELQRMGIGLFLSVLCMSAAAVVEINRLRLARELELVDQNV------SVPISIFWQIPQYFLLGAAEVCTFIGQLEFFYDQSPDAMRXXXXXXXXXXXXLGNYLSSFILTVVTYFTTAGGKTGWIP-----DNLNKGHLDYFFWLLAGLSIFNMLLYVVCAKKYKQKK 807
            VY QM + +V QG+ +                 +   ++ IP A L   +V  ++  VP+ D +I P+  +        S LQ+M +G+F     +  A V+E  RL+     + V Q +      + P+SI+WQIPQY L+G +E+   I  LEF Y ++P +M+            +G+ L S ++ +++         GW+       N+N   +D +F+LLAG+     +L++  A +Y++ +
Sbjct:  331 VYFQMQSTYVLQGLHLHIPNIFRTNPNISLPLRSDSSNYRIPEAWLLLANVAVILILVPVKDHLIDPLLLRCKLLP---SALQKMALGMFFGFTSIIVAGVLEKERLQYIAANQTVPQLIGKDLYYAAPLSIWWQIPQYLLIGISEIFASIPGLEFAYSEAPRSMQGAIMGIFFCLSGVGSLLGSGLVALLSL------PGGWMYCPKDFGNINNCRMDLYFFLLAGIQAVTAVLFLWIAGRYERTR 568          
The following BLAST results are available for this feature:
BLAST of CV712169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S15A4_XENLA7.456e-2327.39Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A4_BOVIN1.661e-2227.76Solute carrier family 15 member 4 OS=Bos taurus GN... [more]
S15A3_HUMAN1.837e-2128.80Solute carrier family 15 member 3 OS=Homo sapiens ... [more]
S15A3_MOUSE7.222e-1825.91Solute carrier family 15 member 3 OS=Mus musculus ... [more]
S15A3_RAT4.681e-1726.32Solute carrier family 15 member 3 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A08_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712169 ID=CV712169; Name=CV712169; organism=Citrus sinensis; type=EST; length=827bp
TTTTTATTAAGAAATAAATTCATATTATTTTACAAACATTGTTCTTGGAA
CTTTAAGGAGATTTGGTGGCTGTGAAGCTGCAGATTTTATGTACAAAACC
ATTTGGAGAAGTGGCTACTGCGTCTTCTTGTAATAAAATTAACCGGCCTT
CTTCTGCTTGTACTTTTTGGCACAGACAACATACAACAACATATTAAAAA
TGCTGAGTCCAGCTAGAAGCCAGAAAAAATAATCAAGATGACCCTTATTC
AAGTTATCTGGAATCCATCCAGTTTTCCCTCCAGCAGTTGTGAAATAAGT
TACCACTGTCAGAATGAAAGAACTAAGGTAATTGCCTAACGCTGTCGTCA
GAAGAGATAACGCACTGCACAAGCTCCGCATCGCATCTGGAGATTGGTCA
TAGAAGAACTCAAGCTGTCCAATGAATGTACATACTTCTGCCGCACCCAA
CAAGAAATACTGTGGTATTTGCCAAAAGATGCTAATTGGCACAGAAACAT
TTTGGTCAACAAGCTCAAGCTCTCTTGCAAGACGCAATCTATTGATCTCA
ACCACAGCAGCAGCAGACATGCAGAGAACTGACAGAAAGAGGCCAATTCC
CATTCGCTGCAACTCTGAGAAACCCCTCTCCTTGCCTGTGAACTTCCTTG
CTATTGGGACAATGATCTTATCATATATAGGTACCCAGAAAATAACACTG
ATAACATCAAAACTTGAGAGAGAGGCAGGAGGAATGGTGAAAGAACCAAT
AGACGTGTCCATCACCATCCCTTGTTCCACAAACAATGTAGACATTTGGG
CATATACAGCAGAAAAGACAATTCCAG
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