CV712164

Overview
NameCV712164
Unique NameCV712164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: PYK3_DICDI (Dual specificity protein kinase pyk3 OS=Dictyostelium discoideum GN=pyk3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 44/147 (29.93%), Postives = 87/147 (59.18%), Query Frame = 1
Query:  235 LGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVK-IALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            +G G+F  V+   + +G  +A+K + + ++ ++  + FI+ VS++ + HHPN++  +G C +     +  E+ + GSL+D LH+      PL+    +  ++LG    +E+LH   S+ ++H+++ S NILLD   N +++D GLA+
Sbjct: 1063 VGAGSFANVFLGIW-NGYKVAIKILKNESISND--EKFIKEVSSLIKSHHPNVVTFMGACID--PPCIFTEYLQGGSLYDVLHIQKIKLNPLMMYKMIHDLSLG----MEHLH---SIQMLHRDLTSKNILLDEFKNIKIADFGLAT 1197          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: SIK2_CHICK (Serine/threonine-protein kinase SIK2 OS=Gallus gallus GN=SIK2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 1
Query:  202 MATGSFNVENLLGGGTFGRVYRAQFADGKV-LAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFL----HLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            +  G +++E  LG G F  V  A+    K  +A+K ID + L     +     V  +  L+HP+I++L           +V EF KNG + D L    HLS+ + +   W            A+EY H   S  +VH+++K+ N+LLD  +N +L+D G  +
Sbjct:   21 LRVGFYDIERTLGKGNFAVVKLARHRVTKTQVAIKIIDKTRLDPSNLEKIYREVQIMKLLNHPHIIKLYQVMETKDMLYIVTEFAKNGEMFDHLTSNGHLSESEARKKFWQ--------ILSAVEYCH---SHHIVHRDLKTENLLLDANMNIKLADFGFGN 171          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: RMIL_AVII1 (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian retrovirus IC10 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  193 DLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            D ++  G   V   +G G+FG VY+ ++     +AVK ++ +A   +    F   V  + +  H NI+  +GY ++  Q  +V ++ +  SL+  LH+ +   + +     + IA  TA+ ++YLH   + S++H+++KS NI L  +L  ++ D GLA+
Sbjct:   59 DWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 209          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: RMIL_AVEVR (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian rous-associated virus type 1 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  193 DLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            D ++  G   V   +G G+FG VY+ ++     +AVK ++ +A   +    F   V  + +  H NI+  +GY ++  Q  +V ++ +  SL+  LH+ +   + +     + IA  TA+ ++YLH   + S++H+++KS NI L  +L  ++ D GLA+
Sbjct:   75 DWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 225          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: PATS1_DICDI (Probable serine/threonine-protein kinase pats1 OS=Dictyostelium discoideum GN=pats1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 48/146 (32.88%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  223 VENLLGGGTFGRVYRAQFADGKVLAVKK---IDSSALPSEMCDDFIEMVSN--------ISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILL 627
            +E L+G G    VYRA++  G+ +AVKK   I++   P E+ D  +    N        +S+L HPNI++L G C +     +V E+  +G+L+ FLH  + +     W  R+K+AL  +  + +LH   +  ++H+++KS NILL
Sbjct: 2249 IEELIGEGGAALVYRARW-QGQTVAVKKLKTIENLDSPIEINDISLSKAFNEFRRECWVMSELEHPNIVQLKGLCLD--PLCIVTEYLPHGNLYSFLHKPEME---FSWLFRLKVALDISSGMAFLHS-STPPIIHRDLKSPNILL 2387          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: LIMK2_HUMAN (LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 43/147 (29.25%), Postives = 76/147 (51.70%), Query Frame = 1
Query:  232 LLGGGTFGRVYRAQF-ADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLA 669
            +LG G FG+  +    A GKV+ +K++       E    F+  V  +  L HPN+++ +G   +  +  L+ E+ + G+L DFL   D    P  W  +V+ A G A  + YLH +C   ++H+++ S N L+  +    ++D GL+
Sbjct:  336 VLGKGFFGQAIKVTHKATGKVMVMKEL--IRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRSMD----PFPWQQKVRFAKGIASGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLS 473          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: DRKB_DICDI (Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 38/146 (26.03%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  235 LGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            +G G FG VY   +  G  +AVKK+ +  +   +  +F   ++ +  L HPN+++ +G C       +  E+   GSL+  LH    +   + W+   ++ +  A+ + YLH    + ++H+++KS N+L+D     +++D GL++
Sbjct:  397 IGKGNFGEVYLGTWR-GSQVAVKKLPAHNINENILKEFHREINLMKNLRHPNVIQFLGSCLISPDICICTEYMPRGSLYSILH---NEKIKISWSLVKRMMIDAAKGIIYLHGSTPV-ILHRDLKSHNLLVDENWKVKVADFGLST 537          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: BRAF1_MOUSE (B-Raf proto-oncogene serine/threonine-protein kinase OS=Mus musculus GN=Braf PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  193 DLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            D ++  G   V   +G G+FG VY+ ++     +AVK ++ +A   +    F   V  + +  H NI+  +GY ++  Q  +V ++ +  SL+  LH+ +   + +     + IA  TA+ ++YLH   + S++H+++KS NI L  +L  ++ D GLA+
Sbjct:  486 DWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 636          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: BRAF1_HUMAN (B-Raf proto-oncogene serine/threonine-protein kinase OS=Homo sapiens GN=BRAF PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  193 DLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            D ++  G   V   +G G+FG VY+ ++     +AVK ++ +A   +    F   V  + +  H NI+  +GY ++  Q  +V ++ +  SL+  LH+ +   + +     + IA  TA+ ++YLH   + S++H+++KS NI L  +L  ++ D GLA+
Sbjct:  449 DWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 599          
BLAST of CV712164 vs. ExPASy Swiss-Prot
Match: BRAF1_COTJA (B-Raf proto-oncogene serine/threonine-protein kinase OS=Coturnix coturnix japonica GN=BRAF PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 45/160 (28.12%), Postives = 86/160 (53.75%), Query Frame = 1
Query:  193 DLQMATGSFNVENLLGGGTFGRVYRAQFADGKVLAVKKIDSSALPSEMCDDFIEMVSNISQLHHPNIMELVGYCSEYGQHLLVYEFRKNGSLHDFLHLSDEDNKPLIWNSRVKIALGTARALEYLHEVCSLSVVHKNIKSANILLDNELNPQLSDCGLAS 672
            D ++  G   V   +G G+FG VY+ ++     +AVK ++ +A   +    F   V  + +  H NI+  +GY ++  Q  +V ++ +  SL+  LH+ +   + +     + IA  TA+ ++YLH   + S++H+++KS NI L  +L  ++ D GLA+
Sbjct:  489 DWEIPDGQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTK-PQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMDYLH---AKSIIHRDLKSNNIFLHEDLTVKIGDFGLAT 639          
The following BLAST results are available for this feature:
BLAST of CV712164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
PYK3_DICDI1.588e-1129.93Dual specificity protein kinase pyk3 OS=Dictyostel... [more]
SIK2_CHICK2.075e-1129.63Serine/threonine-protein kinase SIK2 OS=Gallus gal... [more]
RMIL_AVII12.075e-1128.13Serine/threonine-protein kinase-transforming prote... [more]
RMIL_AVEVR2.075e-1128.13Serine/threonine-protein kinase-transforming prote... [more]
PATS1_DICDI2.075e-1132.88Probable serine/threonine-protein kinase pats1 OS=... [more]
LIMK2_HUMAN2.075e-1129.25LIM domain kinase 2 OS=Homo sapiens GN=LIMK2 PE=1 ... [more]
DRKB_DICDI2.075e-1126.03Probable serine/threonine-protein kinase drkB OS=D... [more]
BRAF1_MOUSE2.075e-1128.13B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_HUMAN2.075e-1128.13B-Raf proto-oncogene serine/threonine-protein kina... [more]
BRAF1_COTJA2.075e-1128.13B-Raf proto-oncogene serine/threonine-protein kina... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A05_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712164 ID=CV712164; Name=CV712164; organism=Citrus sinensis; type=EST; length=676bp
CAAGAATTGAAGTCGGTACAGAGTTCCTCTTCCATCGACACAAAGACATT
TGACACTGCTGTCTCTATAAATCTACGACCCCCACCAATTGATCGTCACA
AATCATTTGATGAAGAAGACTTTTCAAAGAAGCCCATTGTCGTCAAGAAA
GCTGTTAAAGCTCCCACAAATGTAACATCATATTCTATAGCCGACCTGCA
GATGGCTACTGGCAGCTTCAATGTTGAAAACCTCCTAGGTGGGGGAACTT
TTGGACGTGTTTATCGAGCACAATTTGCCGATGGAAAGGTTCTTGCAGTG
AAGAAAATAGATTCATCTGCCCTTCCCAGTGAAATGTGTGATGATTTTAT
CGAGATGGTTTCAAACATATCCCAGCTGCATCACCCGAACATAATGGAGC
TAGTGGGTTATTGTTCGGAGTATGGACAGCACCTGCTAGTGTATGAGTTC
CGTAAAAATGGTTCACTGCACGACTTCTTGCATCTGTCGGATGAAGACAA
CAAGCCTTTGATATGGAACTCCCGTGTCAAGATTGCTTTGGGGACTGCAC
GAGCACTGGAGTACCTGCATGAAGTCTGCTCACTGTCAGTTGTTCACAAA
AATATTAAGTCGGCCAACATATTACTGGACAACGAGCTCAATCCTCAACT
TTCTGACTGTGGCCTGGCAAGCAATA
back to top