CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.163e-64
Identity = 120/185 (64.86%), Postives = 152/185 (82.16%), Query Frame = -2
Query:  199 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 753
            L++T KFMNKPVRILVK+D LTLEGI+Q+Y+NVE EE+K + L DLY+++++TQ+VIF NTRRKV+ LT ++     TVSA + D+ Q  RD IM+EFR+GSSR+LI+TDLLARGIDVQQVSLVINYDLP   ENY+HRIGR GRFGRKGVAIN VT  D   + ++++FY+  IEELP+N+ADL
Sbjct:  210 LDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDCLSDLYDSISVTQAVIFCNTRRKVEELTKRLTDDSFTVSAIYSDLPQAQRDTIMKEFRTGSSRILISTDLLARGIDVQQVSLVINYDLPNNKENYIHRIGRGGRFGRKGVAINLVTDRDVGDMRELERFYSTQIEELPANIADL 394          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.984e-64
Identity = 115/185 (62.16%), Postives = 151/185 (81.62%), Query Frame = -2
Query:  199 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 753
            LE+T+KFM+ PV+ILVKRDE++LEGIKQ+YVNVEKE+WK +TLCDLY++L ITQ VIF NT++KVDWL+ K+   +  V + HGDM Q  R+ +M +FRSG SRVLI+TD+ ARGIDVQQVSLVINYD+P   ENY+HRIGRSGRFGRKGVAINF+T  D   + +I+K+Y + I  +P++++ +
Sbjct:  214 LEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKLTQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGVAINFITSSDLSKMKEIEKYYRIKISPVPADLSTI 398          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 9.848e-64
Identity = 115/186 (61.83%), Postives = 149/186 (80.11%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T KF + PV+ILVKRD++TL+GIKQ+Y+  EKE+WK +TLCDLY+ L ITQ+VIF NT+ KV+WL  +MR  + TV+A HGDM Q  RD IM+EFRSGS+RVLI+TD+ ARGIDVQQVSLVINYDLP   ENY+HRIGRSGRFGRKG AIN +T  D+  L  +Q +Y+  I E+P++++ ++
Sbjct:  212 LEMTNKFTSDPVKILVKRDDVTLKGIKQYYIQCEKEDWKFDTLCDLYDNLTITQAVIFCNTKAKVNWLAGQMRKSNFTVAAMHGDMKQEDRDSIMKEFRSGSTRVLISTDVWARGIDVQQVSLVINYDLPLDKENYVHRIGRSGRFGRKGTAINLLTSQDKDELKSLQHYYSTKIREVPADLSKIM 397          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.422e-62
Identity = 118/186 (63.44%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  PVRILVKR+ LTLEGIKQF++ VE EE KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  217 LELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELPVDFAAYL 401          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.422e-62
Identity = 118/186 (63.44%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  PVRILVKR+ LTLEGIKQF++ VE EE KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  217 LELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEAHYHTQIDELPVDFAAYL 401          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.857e-62
Identity = 118/186 (63.44%), Postives = 148/186 (79.57%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  PVRILVKR+ LTLEGIKQF++ VE EE KL+TL DLYET++I QSVIF NTRRKVDW+ +K+   +HTVS+ H +M ++ R+ +M  FRSGSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT  D  +L +I+  Y+  I+ELP + A  L
Sbjct:  217 LELTKKFMRDPVRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIEGHYHTQIDELPVDFAAYL 401          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.404e-62
Identity = 117/182 (64.29%), Postives = 142/182 (78.02%), Query Frame = -2
Query:  208 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNV 753
            LE+T KFM  PVRILVK DELTLEGIKQ+YV+V+KEEWK +TLCDLY  L I Q++IF NTR+KVDWLT+KMRS +  VS+ HGD  Q  RD IM +FRS  SRVLI +D+ ARGIDVQ VS VINYD+P  PE Y+HRIGR+GRFGR+GVAINFV   D + L DI++ Y   I E+P+++
Sbjct:  210 LEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIERHYGTKIREMPADL 391          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.204e-61
Identity = 118/186 (63.44%), Postives = 146/186 (78.49%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  P RILVKR+ LTLEGIKQF++ VE EE KL+TL DLYET++I QSVIF NTRRKVDWL  ++ S +HTVS  H +M +  R+ +M  FR+GSSRVL+TTDL+ARGIDV  V++VIN+DLPT  ENYLHRIGR GR+GRKGVAINFVT+ D  +L +I+  Y+  IEELP + A  L
Sbjct:  218 LELTKKFMRDPTRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLASQLNSSNHTVSCMHSEMSKQEREKVMGTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIEELPVDFAAYL 402          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.606e-60
Identity = 114/186 (61.29%), Postives = 145/186 (77.96%), Query Frame = -2
Query:  196 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 753
            LE+T+KFM  P RILVKR+ LTLEGIKQ+++ VE EE KL+TL DLYET++I QSVIF NTRRKVDWL  ++   +HTVS  H +M +  R+ +M  FR+GSSRVL+TTDL+ARGIDV  V++VIN+DLPT  E+YLHRIGR GR+GRKGVAINFVT+ D  +L +I+  Y+  I+ELP + A  L
Sbjct:  218 LELTKKFMRDPTRILVKRESLTLEGIKQYFIAVE-EEHKLDTLMDLYETVSIAQSVIFANTRRKVDWLAQQLNQSNHTVSCMHSEMPKQDREKVMSTFRNGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKESYLHRIGRGGRYGRKGVAINFVTQKDVEVLREIESHYHTQIDELPVDFAAYL 402          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 7.074e-54
Identity = 116/189 (61.38%), Postives = 142/189 (75.13%), Query Frame = -2
Query:  196 ALEITRKFMNKPVRILVKRDELTLEGI--KQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 756
            ALE+ RK+MNKPV I+V RDE  LEGI  KQFYVNVEKE+ KL+ LC L++T+ IT+S+IFVNTR     LT+K+R + +TVSA HG + Q  RD  ++EF+SGSSR+LITTDL  RGIDV +    I YDLPTQP  YL  + +SG+ GRKGVAI+F+T  DER+   IQKF N  IEELPSNVADLL
Sbjct:  232 ALEMCRKYMNKPVEIIVPRDE-ELEGINVKQFYVNVEKEDCKLDKLCGLFDTMEITRSIIFVNTRHHAKSLTEKIRGKGYTVSAIHGGIHQRARDKAVQEFQSGSSRILITTDL--RGIDVLRAPAAIFYDLPTQPVCYLRHV-QSGQHGRKGVAISFITSTDERVFSTIQKFCNTQIEELPSNVADLL 416          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_ASHGO1.163e-6464.86ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
FAL1_VANPO1.984e-6462.16ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
FAL1_PICGU9.848e-6461.83ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
IF4A_LEIMA1.422e-6263.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN1.422e-6263.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIBR1.857e-6263.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
RH34_ARATH5.404e-6264.29DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A_TRYBB1.204e-6163.44Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_TRYCR6.606e-6061.29Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A2_ORYSJ7.074e-5461.38Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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