CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.606e-35
Identity = 75/183 (40.98%), Postives = 113/183 (61.75%), Query Frame = -2
Query:  220 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 750
            +   + +  P  I ++++ELTL  I+Q+YV     + K + LC++Y  + I Q++IF  TRR   WLT +M    H VS   G++  + R  I++ FR G  +VLITT++ ARGIDV+QV++V+N+DLP         E YLHRIGR+GRFG+KG+A N +  D   +L  IQ  +N  I++L
Sbjct:  288 QFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCNIYGGITIGQAIIFCQTRRNAKWLTVEMMQDGHQVSLLSGELTVDQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVNQAEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDKLPLLMKIQDHFNSSIKQL 470          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.606e-35
Identity = 77/190 (40.53%), Postives = 117/190 (61.58%), Query Frame = -2
Query:  202 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVAD 750
            +  +K +  P  I +KR+E TL+ IKQ+YV     + K + LC+LY  + I Q++IF +TR+   WL  ++    H V+   G+M    R  ++  FR G  +VL+TT++ ARGIDV+QVS+VIN+DLP         E YLHRIGR+GRFG++G+A+N V ++    +L  IQ+ +N  IE L ++  D
Sbjct:  283 KFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 472          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.606e-35
Identity = 77/190 (40.53%), Postives = 117/190 (61.58%), Query Frame = -2
Query:  202 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVAD 750
            +  +K +  P  I +KR+E TL+ IKQ+YV     + K + LC+LY  + I Q++IF +TR+   WL  ++    H V+   G+M    R  ++  FR G  +VL+TT++ ARGIDV+QVS+VIN+DLP         E YLHRIGR+GRFG++G+A+N V ++    +L  IQ+ +N  IE L ++  D
Sbjct:  282 KFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 76/190 (40.00%), Postives = 117/190 (61.58%), Query Frame = -2
Query:  202 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSNVAD 750
            +  +K +  P  I +KR+E TL+ IKQ+YV     + K + LC++Y  + I Q++IF +TR+   WL  ++    H V+   G+M    R  ++  FR G  +VL+TT++ ARGIDV+QVS+VIN+DLP         E YLHRIGR+GRFG++G+A+N V ++    +L  IQ+ +N  IE L ++  D
Sbjct:  282 KFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQALCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMVVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLD 471          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP5_SCLS1 (ATP-dependent RNA helicase dbp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 80/183 (43.72%), Postives = 113/183 (61.75%), Query Frame = -2
Query:  220 RKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ--------PENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEEL 741
            ++F  +   I +KRDELT+ GIKQ +++   E  K E L  LY  + I  S+IFV  R     + +++ +  H V+A HG  +   RD ++ +FR G ++VLITT++LARGIDVQ VS+VINYD+P +        PE YLHRIGR+GRFGR GV+I+FV  R     L  I   YN+ + +L
Sbjct:  261 QQFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGKYEILVKLYGLMTIGSSIIFVKRRDTASHIAERLTAEGHKVAAIHGAFEGAERDTVLEDFRQGKAKVLITTNVLARGIDVQSVSMVINYDIPMKGRSDFEPDPETYLHRIGRTGRFGRVGVSISFVFDRKSYDALNKIAHHYNIDLIKL 443          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.638e-34
Identity = 82/185 (44.32%), Postives = 116/185 (62.70%), Query Frame = -2
Query:  220 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--QP---------ENYLHRIGRSGRFGRKGVAINFVT-RDDERMLFDIQKFYNVVIEEL 738
            KF      I ++ +ELT+EGIKQ Y++    E K +TL  LY  L +  S+IFV TR     +  +M +  HTV +  G+ D + RD I+ +FR G ++VLI T++LARGIDV  VS+VINYD+P   QP         + YLHRIGR+GRFGR GV+I+FV+ R++  ML  IQ ++N  I+ +
Sbjct:  275 KFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYKTLVQLYGLLTVGSSIIFVQTRAAAQEIEKRMTAEGHTVVSLTGERDPSVRDAIIDQFRRGEAKVLIATNVLARGIDVSTVSMVINYDIPELHQPSVPGRQADFQTYLHRIGRTGRFGRVGVSISFVSNREEWEMLNQIQTYFNCEIQRV 459          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX25_XENLA (ATP-dependent RNA helicase DDX25 OS=Xenopus laevis GN=deadsouth PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.140e-34
Identity = 73/176 (41.48%), Postives = 111/176 (63.07%), Query Frame = -2
Query:  214 PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQP------ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 723
            P  I +K++ELTL+ I+QFY   E +E K   LC+LY  + I Q+++F  TR+   WL+ K+    H V+   G++    R  +++ FR G  +VL+TT++ ARGIDV+QVS+V+N+DLP         E YLHRIGR+GRFG+KG+A++ +      ML +I+  +N  I +L S
Sbjct:  297 PNIIKLKKEELTLKNIQQFYDQCENKEQKYSALCNLYGVITIAQAIVFCQTRKIASWLSQKLSDDGHQVALLSGELPVYDRADMIQRFREGREKVLVTTNVCARGIDVEQVSIVVNFDLPVNVDGSVDFETYLHRIGRTGRFGKKGIAVSLIENFFVYMLKEIEDHFNTKITKLNS 472          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.795e-34
Identity = 75/177 (42.37%), Postives = 115/177 (64.97%), Query Frame = -2
Query:  241 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 750
            +  +K +     + ++ +E+ ++ IKQ Y++ + E  K + L +LY  + I  S+IFV T++  + L  K++S  H VS  HGD+    RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  Y+HRIGR+GRFGRKGVAI+FV  ++   +L  IQK++
Sbjct:  280 QYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 456          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.795e-34
Identity = 75/177 (42.37%), Postives = 115/177 (64.97%), Query Frame = -2
Query:  241 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFY 750
            +  +K +     + ++ +E+ ++ IKQ Y++ + E  K + L +LY  + I  S+IFV T++  + L  K++S  H VS  HGD+    RD ++ +FR G S+VLITT++LARGID+  VS+V+NYDLPT       P  Y+HRIGR+GRFGRKGVAI+FV  ++   +L  IQK++
Sbjct:  280 QYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYF 456          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP5_PHANO (ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria nodorum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.795e-34
Identity = 76/189 (40.21%), Postives = 116/189 (61.38%), Query Frame = -2
Query:  211 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT-------QPENYLHRIGRSGRFGRKGVAINFV-TRDDERMLFDIQKFYNVVIEELPSN 753
            +    KF      + +  +ELT+EGIKQ Y++++K++ K  TL   Y  +    S+IFV TRR  + L  +M +  H V+   G ++   RD ++ +FRSG ++VLITT++LARGIDV+ V++VINYD+PT        PE YLHRIGR+GRFGR GVA+ FV  +   + L DI  ++   +  + ++
Sbjct:  252 INYANKFAPNSNVLTLAHEELTIEGIKQLYIDIDKDQDKYSTLLKFYGLMTQASSIIFVRTRRTAEELERRMVAEGHKVAQLSGALEGQDRDRVIDQFRSGEAKVLITTNVLARGIDVESVTMVINYDVPTMADGREADPETYLHRIGRTGRFGRVGVALTFVHDKASWQQLHDIASYFKTDLHPIDTS 440          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX25_BOVIN9.606e-3540.98ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DD19B_HUMAN9.606e-3540.53ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DD19A_HUMAN9.606e-3540.53ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DD19A_BOVIN1.638e-3440.00ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP5_SCLS11.638e-3443.72ATP-dependent RNA helicase dbp5 OS=Sclerotinia scl... [more]
DBP5_NEOFI1.638e-3444.32ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DDX25_XENLA2.140e-3441.48ATP-dependent RNA helicase DDX25 OS=Xenopus laevis... [more]
DBP5_YEAST2.795e-3442.37ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS72.795e-3442.37ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_PHANO2.795e-3440.21ATP-dependent RNA helicase DBP5 OS=Phaeosphaeria n... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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