CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPW (ATP-dependent RNA helicase rhlB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rhlB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 57/160 (35.62%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750
            E+    MN+P ++ +  +E T + IK+  FY ++E+   K+  L  L E     ++++F NT+   + +   +    H V    GD+ Q  R  I+ +F SG   VL+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KGV+++F   +
Sbjct:  207 ELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = -2
Query:  196 EITRKFMNKPVRI--LVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT-QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PSNVADLL 750
            ++ RK+++ P+ I  +  +DE   EGIK + +       K   L DL    A   ++++F  T+R  D ++  + S      A HGD+ Q+ R+  +  FR G   VL+ TD+ +RG+D+  V LVI+Y+LP  PE ++HR GR+GR G++G AI   T   +R +  +++      E + P  V DLL
Sbjct:  299 KLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 61/187 (32.62%), Postives = 98/187 (52.41%), Query Frame = -2
Query:  199 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 747
            +T+K + +PV I V    +    I Q  V +  E  K    LE L +LY      +++IFV  + K D L  ++  R +   + HG  DQ  R+  + +F+ G   ++I T + ARG+DV+Q+ LV+NYD P   E+Y+HR GR+GR G  G A+ F+T + E     I K      + +P  + ++
Sbjct:  627 LTKKVLREPVEIQVGGRSVVAPEITQI-VEILDEGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGIAKALEQSGQPVPEQLNEM 812          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_NEOFI (ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -2
Query:  244 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 660
            N +++  ++E   ++ E+     +++F  T+  VD+L   +      VS  +G +DQ  R I ++ FR+G + +L+ TD+ ARGID+  ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V   D   L D+Q F
Sbjct:  354 NKKRKRAEMEKAVNMRESPTKHSTIVFAATKHHVDYLYSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 492          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEWM (ATP-dependent RNA helicase rhlB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = -2
Query:  277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750
            E+    MN+P ++++  +E T + IK+  FY ++++   K+  L  L E     ++++F NT+   + +   +    H V    GD+ Q  R  I+ +F  G   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KGV+++F   +
Sbjct:  207 ELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDE---KMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEE 363          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEDO (ATP-dependent RNA helicase rhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = -2
Query:  289 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 750
            E+    MN P ++ V  +E T + IK+  FY + E    K+  L  L E     ++++F NT+   + L   +    H V    GD+ Q  R  I+ +F SG   VL+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G KGV+++F
Sbjct:  207 ELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTED---KMRLLLTLMEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEAM (ATP-dependent RNA helicase rhlB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rhlB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = -2
Query:  277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750
            E+    MN PV++ +  +E T   IK+  FY ++E    KL+ L  L E     ++++F NT+ + + L   + +  H V    GD+ Q  R  I+ +F      +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KGV+++F   +
Sbjct:  207 ELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMED---KLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 51/130 (39.23%), Postives = 81/130 (62.31%), Query Frame = -2
Query:  223 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 612
            E+ A + ++IFVN     + L   +++ D  V++ H  M Q  R   M  FR+ ++RVLI TD+ +RG+D+  V LVINYD+P+ P+ ++HR GR+ R GRKG AI+F+T+ D   +  I+   N+ + E
Sbjct:  257 ESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRDVSRIEAIEARINMKMTE 386          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = -2
Query:  253 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 588
            +IFV T+R  D +T  +R       + HGD  QN RD ++ +F++G S +++ TD+ +RGIDV+ ++ V+NYD P   E+Y+HRIGR+GR G  G AI   T D+++   D+
Sbjct:  385 LIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDL 496          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = -2
Query:  244 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 654
            +++  +++   ++ E+     +++F  T+  VD+L   +R     VS  +G +DQ  R I +  FR+G S +L+ TD+ ARGID+  ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V   D   L D+Q F
Sbjct:  356 KRKRSEMDKAVNMKESPTKHSTIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 492          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_SHEPW2.077e-2135.63ATP-dependent RNA helicase rhlB OS=Shewanella piez... [more]
RH3_ARATH2.077e-2133.33DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
PRP5_CHAGB2.077e-2132.62Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DBP10_NEOFI2.077e-2135.25ATP-dependent RNA helicase dbp10 OS=Neosartorya fi... [more]
RHLB_SHEWM2.713e-2133.75ATP-dependent RNA helicase rhlB OS=Shewanella wood... [more]
RHLB_SHEDO2.713e-2137.82ATP-dependent RNA helicase rhlB OS=Shewanella deni... [more]
RHLB_SHEAM2.713e-2135.63ATP-dependent RNA helicase rhlB OS=Shewanella amaz... [more]
DBP8_CANGA2.713e-2139.23ATP-dependent RNA helicase DBP8 OS=Candida glabrat... [more]
DBP2_GIBZE2.713e-2141.07ATP-dependent RNA helicase DBP2 OS=Gibberella zeae... [more]
DBP10_ASPTN2.713e-2135.77ATP-dependent RNA helicase dbp10 OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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