CV712162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEPW (ATP-dependent RNA helicase rhlB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rhlB PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21 Identity = 57/160 (35.62%), Postives = 92/160 (57.50%), Query Frame = -2 Query: 277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750 E+ MN+P ++ + +E T + IK+ FY ++E+ K+ L L E ++++F NT+ + + + H V GD+ Q R I+ +F SG VL+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+KGV+++F + Sbjct: 207 ELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRVGLLTGDVPQKKRLRILEQFTSGDIDVLVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21 Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = -2 Query: 196 EITRKFMNKPVRI--LVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT-QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL-PSNVADLL 750 ++ RK+++ P+ I + +DE EGIK + + K L DL A ++++F T+R D ++ + S A HGD+ Q+ R+ + FR G VL+ TD+ +RG+D+ V LVI+Y+LP PE ++HR GR+GR G++G AI T +R + +++ E + P V DLL Sbjct: 299 KLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLAL-SNSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLL 485
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: PRP5_CHAGB (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium globosum GN=PRP5 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21 Identity = 61/187 (32.62%), Postives = 98/187 (52.41%), Query Frame = -2 Query: 199 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 747 +T+K + +PV I V + I Q V + E K LE L +LY +++IFV + K D L ++ R + + HG DQ R+ + +F+ G ++I T + ARG+DV+Q+ LV+NYD P E+Y+HR GR+GR G G A+ F+T + E I K + +P + ++ Sbjct: 627 LTKKVLREPVEIQVGGRSVVAPEITQI-VEILDEGKKFVRLLELLGELYADDDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCAPGIAKALEQSGQPVPEQLNEM 812
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_NEOFI (ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp10 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.077e-21 Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = -2 Query: 244 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 660 N +++ ++E ++ E+ +++F T+ VD+L + VS +G +DQ R I ++ FR+G + +L+ TD+ ARGID+ ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V D L D+Q F Sbjct: 354 NKKRKRAEMEKAVNMRESPTKHSTIVFAATKHHVDYLYSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 492
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEWM (ATP-dependent RNA helicase rhlB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rhlB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = -2 Query: 277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750 E+ MN+P ++++ +E T + IK+ FY ++++ K+ L L E ++++F NT+ + + + H V GD+ Q R I+ +F G +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+KGV+++F + Sbjct: 207 ELAYDHMNEPEKVVIAPNEKTSKNIKEEIFYPSMDE---KMRLLLSLIEEDWPEKAIVFSNTKHSCENVWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTEGKLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGKKGVSVSFACEE 363
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEDO (ATP-dependent RNA helicase rhlB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rhlB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = -2 Query: 289 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 750 E+ MN P ++ V +E T + IK+ FY + E K+ L L E ++++F NT+ + L + H V GD+ Q R I+ +F SG VL+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G KGV+++F Sbjct: 207 ELAYDHMNDPEKVEVTPEEKTSKNIKEEIFYPSTED---KMRLLLTLMEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTSGDLDVLVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSF 359
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEAM (ATP-dependent RNA helicase rhlB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rhlB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 57/160 (35.62%), Postives = 91/160 (56.88%), Query Frame = -2 Query: 277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750 E+ MN PV++ + +E T IK+ FY ++E KL+ L L E ++++F NT+ + + L + + H V GD+ Q R I+ +F +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+KGV+++F + Sbjct: 207 ELAYDHMNDPVKVEIAPEEKTSRNIKEEIFYPSMED---KLKLLHSLIEEDWPEKAIVFANTKYQCENLWASLEADGHRVGLLTGDVPQKKRLKILEQFTQSELDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFACEE 363
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_CANGA (ATP-dependent RNA helicase DBP8 OS=Candida glabrata GN=DBP8 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 51/130 (39.23%), Postives = 81/130 (62.31%), Query Frame = -2 Query: 223 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 612 E+ A + ++IFVN + L +++ D V++ H M Q R M FR+ ++RVLI TD+ +RG+D+ V LVINYD+P+ P+ ++HR GR+ R GRKG AI+F+T+ D + I+ N+ + E Sbjct: 257 ESYANSTAIIFVNRTTAAEVLRRTLKALDVRVASLHSQMPQQERTNSMHRFRANAARVLIATDVASRGLDIPTVELVINYDIPSDPDTFIHRSGRTARAGRKGDAISFITQRDVSRIEAIEARINMKMTE 386
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP2_GIBZE (ATP-dependent RNA helicase DBP2 OS=Gibberella zeae GN=DBP2 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 46/112 (41.07%), Postives = 72/112 (64.29%), Query Frame = -2 Query: 253 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 588 +IFV T+R D +T +R + HGD QN RD ++ +F++G S +++ TD+ +RGIDV+ ++ V+NYD P E+Y+HRIGR+GR G G AI T D+++ D+ Sbjct: 385 LIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAMGTAITLFTTDNQKQARDL 496
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPTN (ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 49/137 (35.77%), Postives = 83/137 (60.58%), Query Frame = -2 Query: 244 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 654 +++ +++ ++ E+ +++F T+ VD+L +R VS +G +DQ R I + FR+G S +L+ TD+ ARGID+ ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V D L D+Q F Sbjct: 356 KRKRSEMDKAVNMKESPTKHSTIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 492 The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bpback to top |