CV712162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_AJECN (ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21 Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = -2 Query: 244 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 591 ++IF T+ VD+LT +R+ VS +G +DQ R I ++ FR G + +L+ TD+ ARGID+ +S VINYD P+QP+ ++HR+GR+ R G+ G + + + D L D+Q F Sbjct: 367 TIIFTATKHHVDYLTSILRTSGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLF 482
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21 Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = -2 Query: 274 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 750 E+ + M PVR+++ E I+Q V EE KL + L E + +IF+ + + L ++ V H + Q R+ I+ F+SG LI TD+LARGID + ++LVINYD+P + Y+HRIGR+GR GRKG A+ F T+ D Sbjct: 323 ELAQSIMTDPVRVIIGHKEAANTNIEQKLVFCGNEEGKLVAIRQLIQEGMFRPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVHRIGRTGRGGRKGTAVTFFTKQD 482
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21 Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = -2 Query: 214 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE---ELPS 747 + R M+ VR++V R IKQ + E+ KL L + +IFV ++ + L ++ D H D+D+ R + R+G + VLI T+++ARG+D + V+ VINYD P Y+HRIGRSGR GR G AI F T +D+ L +I NV+I E+PS Sbjct: 336 LARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIA---NVLISSGCEVPS 513
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21 Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = -2 Query: 244 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 591 ++IF T+ VD+L +R VS +G +DQ R+I + +FR+G S +L+ TD+ ARGID+ ++ VINYD P QP+ ++HR+GR+ R G++G + + V D L D+Q F Sbjct: 366 TIIFAATKHHVDYLASLLRMSGFAVSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLF 481
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPOR (ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae GN=dbp10 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21 Identity = 51/147 (34.69%), Postives = 86/147 (58.50%), Query Frame = -2 Query: 244 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 684 +G + + N +K + + + E+ +++F T+ VD+L +R VS +G +DQ R I ++ FR+G S +L+ TD+ ARGID+ ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V D + D+Q F Sbjct: 344 QGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYMLDLQLF 490
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = -2 Query: 268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750 E+ M P+R+++ E I+Q V EE KL + + + +I F+ + + L ++ V H + RD +++ F++G VLITTD+LARG+D + V++VINYD+P + Y+HRIGR+GR GR G A+ F T++D++ Sbjct: 315 EMAHSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQNGEFKPPIIIFLQSITRAKALFHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDK 476
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 56/156 (35.90%), Postives = 90/156 (57.69%), Query Frame = -2 Query: 289 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 750 E+ + M+ P + V+ + T IK+ FY + +E K+ L L E ++++F NT+ + + D +++ H V GD+ QN R I+ +F SG +L+ TD+ ARG+ + VS V NYDLP E+Y+HRIGR+GR G+ G +I+F Sbjct: 204 ELAYEHMDNPTHVQVEPERKTGTRIKEELFYPS---DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = -2 Query: 199 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 588 +IF +T+R D LT + +R +A HGD Q RD ++ +FRSG + VL+ TD+ ARG+DV+ + V+NYD P E+Y+HRIGR+GR G G A F D + D+ K + +P + ++ Sbjct: 407 IIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 55/175 (31.43%), Postives = 97/175 (55.43%), Query Frame = -2 Query: 157 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE--------RMLFDIQKFYNVVIEEL------PSNVADLL*GGSVFVSLSRQE 639 K E L ++ + ++++FV T++K D++ + + ++ HGD +Q R+ + +FR G VL+ T + ARG+D++ V VIN+DLP+ + Y+HRIGR+GR G G AI+F D + ++L D Q+ +EE+ P + + GG+VF S+ ++ Sbjct: 500 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRGGAVFASVDTRK 674
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 59/178 (33.15%), Postives = 96/178 (53.93%), Query Frame = -2 Query: 214 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 747 + R F+++ + + V R T E I Q V VE + + L L + +++FV T++ D L D + + ++ HGD Q R+ + +FRSG S +L+ T + ARG+D+ V VIN+DLP+ E Y+HRIGR+GR G G+A +F + + D+ +E+PS Sbjct: 390 LARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEVPS 567 The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bpback to top |