CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_AJECN (ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.713e-21
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  244 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 591
            ++IF  T+  VD+LT  +R+    VS  +G +DQ  R I ++ FR G + +L+ TD+ ARGID+  +S VINYD P+QP+ ++HR+GR+ R G+ G + + +   D   L D+Q F
Sbjct:  367 TIIFTATKHHVDYLTSILRTSGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLF 482          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 59/160 (36.88%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  274 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 750
            E+ +  M  PVR+++   E     I+Q  V    EE KL  +  L  E +     +IF+ +  +   L  ++      V   H +  Q  R+ I+  F+SG    LI TD+LARGID + ++LVINYD+P   + Y+HRIGR+GR GRKG A+ F T+ D
Sbjct:  323 ELAQSIMTDPVRVIIGHKEAANTNIEQKLVFCGNEEGKLVAIRQLIQEGMFRPPVIIFLESITRAKALFHELLYDKLNVDVIHAERTQVQREKIIERFKSGDLWCLICTDVLARGIDFKGINLVINYDVPRSAQAYVHRIGRTGRGGRKGTAVTFFTKQD 482          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 64/181 (35.36%), Postives = 94/181 (51.93%), Query Frame = -2
Query:  214 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE---ELPS 747
            + R  M+  VR++V R       IKQ  +    E+ KL  L   +        +IFV ++ +   L  ++   D      H D+D+  R   +   R+G + VLI T+++ARG+D + V+ VINYD P     Y+HRIGRSGR GR G AI F T +D+  L +I    NV+I    E+PS
Sbjct:  336 LARTIMHDAVRVIVGRKNSASSLIKQKLIFAGTEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLDEEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIA---NVLISSGCEVPS 513          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_SCLS1 (ATP-dependent RNA helicase dbp10 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp10 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = -2
Query:  244 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 591
            ++IF  T+  VD+L   +R     VS  +G +DQ  R+I + +FR+G S +L+ TD+ ARGID+  ++ VINYD P QP+ ++HR+GR+ R G++G + + V   D   L D+Q F
Sbjct:  366 TIIFAATKHHVDYLASLLRMSGFAVSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLF 481          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPOR (ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae GN=dbp10 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.544e-21
Identity = 51/147 (34.69%), Postives = 86/147 (58.50%), Query Frame = -2
Query:  244 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 684
            +G  + + N +K +   +   +  E+     +++F  T+  VD+L   +R     VS  +G +DQ  R I ++ FR+G S +L+ TD+ ARGID+  ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V   D   + D+Q F
Sbjct:  344 QGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHVDYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYMLDLQLF 490          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_LODEL (ATP-dependent RNA helicase ROK1 OS=Lodderomyces elongisporus GN=ROK1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = -2
Query:  268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750
            E+    M  P+R+++   E     I+Q  V    EE KL  +  + +       +I F+ +  +   L  ++      V   H +     RD +++ F++G   VLITTD+LARG+D + V++VINYD+P   + Y+HRIGR+GR GR G A+ F T++D++
Sbjct:  315 EMAHSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQNGEFKPPIIIFLQSITRAKALFHELVYDKLNVDVIHAERTPKQRDEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQSAQAYVHRIGRTGRGGRSGKAVTFFTKEDDK 476          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA6 (ATP-dependent RNA helicase rhlB OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=rhlB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 56/156 (35.90%), Postives = 90/156 (57.69%), Query Frame = -2
Query:  289 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 750
            E+  + M+ P  + V+ +  T   IK+  FY +   +E K+  L  L E     ++++F NT+   + + D +++  H V    GD+ QN R  I+ +F SG   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+ G +I+F
Sbjct:  204 ELAYEHMDNPTHVQVEPERKTGTRIKEELFYPS---DEDKMALLLSLMEEEWPDKAIVFANTKHSCEKVADWLQADGHRVGLLSGDVPQNKRLKILEDFTSGKLDILVATDVAARGLHIPMVSHVFNYDLPDDAEDYVHRIGRTGRAGQSGSSISF 356          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  199 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 588
            +IF +T+R  D LT  + +R    +A HGD  Q  RD ++ +FRSG + VL+ TD+ ARG+DV+ +  V+NYD P   E+Y+HRIGR+GR G  G A  F    D +   D+ K      + +P  + ++
Sbjct:  407 IIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREM 535          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX4_MOUSE (Probable ATP-dependent RNA helicase DDX4 OS=Mus musculus GN=Ddx4 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 55/175 (31.43%), Postives = 97/175 (55.43%), Query Frame = -2
Query:  157 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE--------RMLFDIQKFYNVVIEEL------PSNVADLL*GGSVFVSLSRQE 639
            K E L ++   +   ++++FV T++K D++   +     + ++ HGD +Q  R+  + +FR G   VL+ T + ARG+D++ V  VIN+DLP+  + Y+HRIGR+GR G  G AI+F   D +        ++L D Q+     +EE+      P + +    GG+VF S+  ++
Sbjct:  500 KREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRGGAVFASVDTRK 674          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 59/178 (33.15%), Postives = 96/178 (53.93%), Query Frame = -2
Query:  214 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 747
            + R F+++ + + V R   T E I Q  V VE  + +   L  L      + +++FV T++  D L D +    +  ++ HGD  Q  R+  + +FRSG S +L+ T + ARG+D+  V  VIN+DLP+  E Y+HRIGR+GR G  G+A +F    +  +  D+        +E+PS
Sbjct:  390 LARDFLDEYIFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGAAGTDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNEKNINITKDLLDLLVEAKQEVPS 567          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_AJECN2.713e-2140.52ATP-dependent RNA helicase DBP10 OS=Ajellomyces ca... [more]
ROK1_ASHGO3.544e-2136.88ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii... [more]
RH57_ORYSJ3.544e-2135.36DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sa... [more]
DBP10_SCLS13.544e-2140.52ATP-dependent RNA helicase dbp10 OS=Sclerotinia sc... [more]
DBP10_ASPOR3.544e-2134.69ATP-dependent RNA helicase dbp10 OS=Aspergillus or... [more]
ROK1_LODEL4.628e-2133.33ATP-dependent RNA helicase ROK1 OS=Lodderomyces el... [more]
RHLB_PSEA64.628e-2135.90ATP-dependent RNA helicase rhlB OS=Pseudoalteromon... [more]
RH14_ARATH4.628e-2138.46DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
DDX4_MOUSE4.628e-2131.43Probable ATP-dependent RNA helicase DDX4 OS=Mus mu... [more]
DDX3Y_PANTR4.628e-2133.15ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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