CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = -2
Query:  244 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 654
            +++  ++E   +  E+     +++F  T+  VD+L   +      VS  +G +DQ  R I ++ FRSG S +L+ TD+ ARGID+  ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V   D   L D+Q F
Sbjct:  355 KRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYLYSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 491          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = -2
Query:  268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750
            E+ +  M  P+R+++   E     I+Q  V    EE KL  +  + +       +I F+ +  +   L  ++      V   H +     RD +++ F+SG   VLITTD++ARG+D + V+LVINYD+P   + Y+HRIGR+GR G+ G A+ F T++D++
Sbjct:  310 EMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDK 471          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 53/170 (31.18%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753
            LE+  + MN+P +++V+ + +T   ++Q  +    +E K   L  L       ++++FVNT+  V+ +   +    + V    GD+ Q  R+ ++  F+ G   +L+ TD+ ARG+ +  V  V NYDLP   E+Y+HRIGR+ R G +G AI+F        L DI+ +
Sbjct:  207 LELAYEHMNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 53/170 (31.18%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753
            LE+  + MN+P +++V+ + +T   ++Q  +    +E K   L  L       ++++FVNT+  V+ +   +    + V    GD+ Q  R+ ++  F+ G   +L+ TD+ ARG+ +  V  V NYDLP   E+Y+HRIGR+ R G +G AI+F        L DI+ +
Sbjct:  207 LELAYEHMNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = -2
Query:  199 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 588
            +IF +T+R  D L   + +R    +A HGD  Q  RD ++ +FRSG + VL+ TD+ ARG+DV+ + +V+NYD P   E+Y+HRIGR+GR G  G+A  F    D +   D+ K      +++P  V ++
Sbjct:  410 IIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREM 538          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX20_DICDI (Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum GN=ddx20 PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 60/167 (35.93%), Postives = 96/167 (57.49%), Query Frame = -2
Query:  286 LEITRKFMNKP--VRILVKRDELTLEGIKQFYV---------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 753
            + + + +MN    V I +  D  +LEGIKQ+Y          N +  + K ++L  + E ++  Q++IF N + + + LT ++       +   G  +Q  R   M   +S + R+L++TDL++RGIDV++V+LVIN DLP   E Y HRIGR+GRFG  GV+I F+
Sbjct:  306 INLLKLYMNNENLVEIRLCSDTPSLEGIKQYYQIFRNDFTENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFI 472          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = -2
Query:  271 KFMNKPVRILVKRDELTLEGIKQFYVNVEKE-------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 738
            ++M +P  + +   +  L G+KQ+Y  V          E K+++L +L+  +   Q+++F N   +   L D + S+        G + Q+ R   M + +    RVLI+TDL +RGID ++V+LVIN D+P   E Y+HRIGR+GRFG  GVA+ +    +E
Sbjct:  223 RYMREPTFVRLNPTDPGLLGLKQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 45/114 (39.47%), Postives = 75/114 (65.79%), Query Frame = -2
Query:  247 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 588
            +IF N     D+L   +R  DH V++ H  + Q+ R   +  FR+ ++R+L+ TD+ ARG+D+ +V +VINYD+P  P++Y+HR+GR+ R GRKG A+ FV + D  ++  I++
Sbjct:  454 IIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEQ 567          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 60/186 (32.26%), Postives = 101/186 (54.30%), Query Frame = -2
Query:  196 ITRKFMNKPVRILVKRDEL-TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747
            +   +MN+ ++++V  +EL T   IKQ  V V     K + L  + +     + ++F N +R  D L   +    +  +A HGD  QN RD ++ +FRSG   +LI T++  RG+DV  V LVIN+D P   E+Y+HRIGR+ R   K G++  F T  D+    ++ +      + +PS++ D++
Sbjct:  282 LAESYMNEYIQVVVGNEELKTNSKIKQI-VEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLEDMV 466          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21
Identity = 53/170 (31.18%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753
            LE+  ++MN+P +++ + + +T   ++Q  +    EE K+  L  L       ++++FVNT+  V+ +   +    + V    GD+ Q  R+ ++  F+ G   +L+ TD+ ARG+ +  V+ V NYDLP   E+Y+HRIGR+ R G  G AI+F        L DI+ +
Sbjct:  207 LELAYEYMNEPEKLVAETESVTTTRVRQ-RIYFPAEEEKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEAY 375          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_ASPCL4.628e-2136.50ATP-dependent RNA helicase dbp10 OS=Aspergillus cl... [more]
ROK1_DEBHA6.045e-2133.33ATP-dependent RNA helicase ROK1 OS=Debaryomyces ha... [more]
RHLB_XANC56.045e-2131.18ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANAC6.045e-2131.18ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
RH46_ARATH6.045e-2138.46DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
DDX20_DICDI6.045e-2135.93Probable ATP-dependent RNA helicase ddx20 OS=Dicty... [more]
DDX20_DANRE6.045e-2133.74Probable ATP-dependent RNA helicase DDX20 OS=Danio... [more]
DBP8_NEUCR6.045e-2139.47ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]
DBP2_ENCCU6.045e-2132.26ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
RHLB_XYLFT7.894e-2131.18ATP-dependent RNA helicase rhlB OS=Xylella fastidi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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