CV712162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP10_ASPCL (ATP-dependent RNA helicase dbp10 OS=Aspergillus clavatus GN=dbp10 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.628e-21 Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = -2 Query: 244 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 654 +++ ++E + E+ +++F T+ VD+L + VS +G +DQ R I ++ FRSG S +L+ TD+ ARGID+ ++ VINYD P+QP+ ++HR+GR+ R GRKG + + V D L D+Q F Sbjct: 355 KRKRAEMEKAVNTKESPTQHSTIVFAATKHHVDYLYSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANVINYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLF 491
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_DEBHA (ATP-dependent RNA helicase ROK1 OS=Debaryomyces hansenii GN=ROK1 PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 54/162 (33.33%), Postives = 90/162 (55.56%), Query Frame = -2 Query: 268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750 E+ + M P+R+++ E I+Q V EE KL + + + +I F+ + + L ++ V H + RD +++ F+SG VLITTD++ARG+D + V+LVINYD+P + Y+HRIGR+GR G+ G A+ F T++D++ Sbjct: 310 EMAQSIMKDPIRVIIGHKEAASNTIEQKLVFTGNEEGKLLAIRQMIQQGEFKPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQRDEVIKRFKSGDIWVLITTDVIARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDK 471
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 53/170 (31.18%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753 LE+ + MN+P +++V+ + +T ++Q + +E K L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G +L+ TD+ ARG+ + V V NYDLP E+Y+HRIGR+ R G +G AI+F L DI+ + Sbjct: 207 LELAYEHMNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 53/170 (31.18%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753 LE+ + MN+P +++V+ + +T ++Q + +E K L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G +L+ TD+ ARG+ + V V NYDLP E+Y+HRIGR+ R G +G AI+F L DI+ + Sbjct: 207 LELAYEHMNEPEKLVVETESITAARVRQ-RIYFPSDEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 50/130 (38.46%), Postives = 78/130 (60.00%), Query Frame = -2 Query: 199 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 588 +IF +T+R D L + +R +A HGD Q RD ++ +FRSG + VL+ TD+ ARG+DV+ + +V+NYD P E+Y+HRIGR+GR G G+A F D + D+ K +++P V ++ Sbjct: 410 IIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREM 538
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX20_DICDI (Probable ATP-dependent RNA helicase ddx20 OS=Dictyostelium discoideum GN=ddx20 PE=3 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 60/167 (35.93%), Postives = 96/167 (57.49%), Query Frame = -2 Query: 286 LEITRKFMNKP--VRILVKRDELTLEGIKQFYV---------NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 753 + + + +MN V I + D +LEGIKQ+Y N + + K ++L + E ++ Q++IF N + + + LT ++ + G +Q R M +S + R+L++TDL++RGIDV++V+LVIN DLP E Y HRIGR+GRFG GV+I F+ Sbjct: 306 INLLKLYMNNENLVEIRLCSDTPSLEGIKQYYQIFRNDFTENNYKTFQNKCKSLVLVLEQVSFYQAIIFCNHKIRGEELTRQLNREGWPTAFIAGGQNQKDRLSTMSALKSFNIRILVSTDLISRGIDVERVNLVINLDLPKDHETYFHRIGRTGRFGTYGVSITFI 472
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DDX20_DANRE (Probable ATP-dependent RNA helicase DDX20 OS=Danio rerio GN=ddx20 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = -2 Query: 271 KFMNKPVRILVKRDELTLEGIKQFYVNVEKE-------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 738 ++M +P + + + L G+KQ+Y V E K+++L +L+ + Q+++F N + L D + S+ G + Q+ R M + + RVLI+TDL +RGID ++V+LVIN D+P E Y+HRIGR+GRFG GVA+ + +E Sbjct: 223 RYMREPTFVRLNPTDPGLLGLKQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSKGLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGVAVTYCCHGEE 385
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 45/114 (39.47%), Postives = 75/114 (65.79%), Query Frame = -2 Query: 247 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 588 +IF N D+L +R DH V++ H + Q+ R + FR+ ++R+L+ TD+ ARG+D+ +V +VINYD+P P++Y+HR+GR+ R GRKG A+ FV + D ++ I++ Sbjct: 454 IIFCNRTSTADFLHHLLRLLDHRVTSLHSKLPQSQRIDNLGRFRASAARILVATDVAARGLDIPEVKIVINYDIPRDPDDYIHRVGRTARAGRKGDAVTFVGQRDVDLVLAIEQ 567
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21 Identity = 60/186 (32.26%), Postives = 101/186 (54.30%), Query Frame = -2 Query: 196 ITRKFMNKPVRILVKRDEL-TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 747 + +MN+ ++++V +EL T IKQ V V K + L + + + ++F N +R D L + + +A HGD QN RD ++ +FRSG +LI T++ RG+DV V LVIN+D P E+Y+HRIGR+ R K G++ F T D+ ++ + + +PS++ D++ Sbjct: 282 LAESYMNEYIQVVVGNEELKTNSKIKQI-VEVCSGREKEDKLIGVLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVKLVINFDFPGSCEDYVHRIGRTARGNTKEGISHTFFTVGDKANARELIRMLREANQTVPSDLEDMV 466
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.894e-21 Identity = 53/170 (31.18%), Postives = 93/170 (54.71%), Query Frame = -2 Query: 244 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 753 LE+ ++MN+P +++ + + +T ++Q + EE K+ L L ++++FVNT+ V+ + + + V GD+ Q R+ ++ F+ G +L+ TD+ ARG+ + V+ V NYDLP E+Y+HRIGR+ R G G AI+F L DI+ + Sbjct: 207 LELAYEYMNEPEKLVAETESVTTTRVRQ-RIYFPAEEEKIPLLLGLLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLLNRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTARLGADGDAISFACERYAMSLPDIEAY 375 The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bpback to top |