CV712162

Overview
NameCV712162
Unique NameCV712162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:886..1643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH29_ARATH (Putative DEAD-box ATP-dependent RNA helicase 29 OS=Arabidopsis thaliana GN=RH29 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 55/180 (30.56%), Postives = 99/180 (55.00%), Query Frame = -2
Query:  214 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ-SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 750
            E  +  + +P  + +  +      +K  ++ V  EE     L  + E ++  Q ++IFV+T+  V+++    +  +   S  +GDMDQ+ R I +  FR+  + +LI TD+ ARGID+  +  VIN+D P +P+ ++HR+GR+ R GR G A +FVT +D   + D+  F +  +   P+
Sbjct:  220 EFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPT 399          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.297e-20
Identity = 57/177 (32.20%), Postives = 97/177 (54.80%), Query Frame = -2
Query:  217 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 747
            + + F+ + V + V R   T E I Q    VE ++ +   L  L    +   ++IFV T+R  D L+D +       ++ HGD  Q  R+  +  FRSG + +++ T + ARG+D+  V+ V+NYDLP+  ++Y+HRIGR+GR G  G A  F  R ++ ++ D+ +      +E+P
Sbjct:  401 LAKDFLKEYVFLSVGRVGSTSENITQKIEYVEDDDKRSVLLDVLASMPSGGLTLIFVETKRMADMLSDFLLRSKIGATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVP 577          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: ROK1_PICST (ATP-dependent RNA helicase ROK1 OS=Pichia stipitis GN=ROK1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 53/162 (32.72%), Postives = 89/162 (54.94%), Query Frame = -2
Query:  268 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI-FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 750
            E+    M  P+R+++ R E     I Q  V    EE KL  +  + +       +I F+ +  +   L  ++      V   H +     R+ +++ F++G   VLITTD+LARG+D + V++VINYD+P   + Y+HRIGR+GR G+ G A+ F T++D++
Sbjct:  317 EMAHSIMRDPIRVIIGRKEAASNTIDQKLVFTGSEEGKLLAIRQMIQEGEFKPPIIIFLQSIHRAKALFHELLYDKLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDVLARGVDFKGVNMVINYDVPQTAQAYVHRIGRTGRGGKAGRAVTFFTKEDDQ 478          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_VIBFM (ATP-dependent RNA helicase rhlB OS=Vibrio fischeri (strain MJ11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 59/187 (31.55%), Postives = 103/187 (55.08%), Query Frame = -2
Query:  196 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750
            E+  + M +P  ++V+ ++ T   IK+  FY +    + K+  L  L E     +++IF NT+ K + +   + +  H V    GD+ Q  R+ I+ EF  G+  +L+ TD+ ARG+ + QV+ V N+DLP + E+Y+HRIGR+GR G  G +I+F   +    L  I+++    I +   + + LL
Sbjct:  207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS---NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASALL 390          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_VIBF1 (ATP-dependent RNA helicase rhlB OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rhlB PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 59/187 (31.55%), Postives = 103/187 (55.08%), Query Frame = -2
Query:  196 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 750
            E+  + M +P  ++V+ ++ T   IK+  FY +    + K+  L  L E     +++IF NT+ K + +   + +  H V    GD+ Q  R+ I+ EF  G+  +L+ TD+ ARG+ + QV+ V N+DLP + E+Y+HRIGR+GR G  G +I+F   +    L  I+++    I +   + + LL
Sbjct:  207 ELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS---NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGDVPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAEDYVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASALL 390          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RHLB_SHEHH (ATP-dependent RNA helicase rhlB OS=Shewanella halifaxensis (strain HAW-EB4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 53/160 (33.12%), Postives = 90/160 (56.25%), Query Frame = -2
Query:  277 EITRKFMNKPVRILVKRDELTLEGIKQ--FYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 750
            E+    MN+P ++ +  +E T + IK+  FY ++E+   K+  L  L E     ++++F NT+   + +   +    H      GD+ Q  R  I+ +F  G   +L+ TD+ ARG+ +  VS V NYDLP   E+Y+HRIGR+GR G+KG++++F   +
Sbjct:  207 ELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSMEE---KMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILEQFTKGEIDILVATDVAARGLHIADVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISVSFACEE 363          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 61/190 (32.11%), Postives = 103/190 (54.21%), Query Frame = -2
Query:  199 EITRKFMNKPVRILVKRDELTLEGIKQFYVNV-----EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 750
            ++ R+ ++ P+R+ V    +  E I Q  VNV     EK  W LE L  + +   +   ++F + +  VD +  ++      V+A HGD DQ +R   +++F+SG   VLI TD+ ARG+D++ +  V+NYD+    + ++HRIGR+GR G R GVA   VT+ + R   ++        + +P  + DL
Sbjct:  422 KLAREILSDPIRVTVGEVGMANEDITQV-VNVIPSDAEKLPWLLEKLPGMIDEGDV---LVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDL 607          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: PRP5_CRYNE (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus neoformans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 55/172 (31.98%), Postives = 92/172 (53.49%), Query Frame = -2
Query:  253 ITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAIT-------QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 747
            + R+ + KP+ I V    +    I Q  V V   + K   L ++   +          +++IFV+ +   D L  ++  R +  ++ HG  +Q  RD  ++ F++G   +++ T + ARG+DV+++ LVINYD P   E+Y+HR GR+GR G KG  I F+T + ER   DI
Sbjct:  601 LARRILVKPLEITVGGRSVVAPEIDQ-RVEVRDGDTKFTRLLEILGEMGEEHKDEDDFRTLIFVDRQESADDLFRELLQRGYVCASLHGGKEQVDRDEAIKNFKNGDVPIIVATSVAARGLDVKELKLVINYDAPNHMEDYVHRAGRTGRAGNKGTCITFITPEQERFSVDI 771          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_NEOFI (ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = -2
Query:  223 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 612
            E  A   ++IF N  +  D L   +R   H V++ H  + Q+ R+  +  FR+ ++R+L+ TD+ +RG+D+  VSLVINYD+P  P++Y+HR+GR+ R GR G AI  V + D +++  I++     +EE
Sbjct:  347 EDNASRPAIIFCNHTKTADLLERMLRRLTHRVTSLHSLLPQSERNANLARFRASAARILVATDVASRGLDIPTVSLVINYDVPRNPDDYVHRVGRTARAGRSGEAITLVGQRDVQLVLAIEERVGRQMEE 476          
BLAST of CV712162 vs. ExPASy Swiss-Prot
Match: DBP8_EMENI (ATP-dependent RNA helicase dbp8 OS=Emericella nidulans GN=dbp8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 45/119 (37.82%), Postives = 80/119 (67.23%), Query Frame = -2
Query:  247 ITQS-VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 600
            IT+S ++F NT +  D L   +RS  H V++ H  + Q+ R+  +  FR+ ++RVL+ TD+ +RG+D+  VSLV+N+++P  P++Y+HR+GR+ R GR G A+  V + D +++  I++
Sbjct:  349 ITKSAIVFTNTTKSADLLERLLRSLGHRVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTLVGQRDVQLVLAIEE 467          
The following BLAST results are available for this feature:
BLAST of CV712162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH29_ARATH2.297e-2030.56Putative DEAD-box ATP-dependent RNA helicase 29 OS... [more]
DED1_USTMA2.297e-2032.20ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
ROK1_PICST3.000e-2032.72ATP-dependent RNA helicase ROK1 OS=Pichia stipitis... [more]
RHLB_VIBFM3.000e-2031.55ATP-dependent RNA helicase rhlB OS=Vibrio fischeri... [more]
RHLB_VIBF13.000e-2031.55ATP-dependent RNA helicase rhlB OS=Vibrio fischeri... [more]
RHLB_SHEHH3.000e-2033.13ATP-dependent RNA helicase rhlB OS=Shewanella hali... [more]
RH24_ARATH3.000e-2032.11DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
PRP5_CRYNE3.000e-2031.98Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DBP8_NEOFI3.000e-2036.92ATP-dependent RNA helicase dbp8 OS=Neosartorya fis... [more]
DBP8_EMENI3.000e-2037.82ATP-dependent RNA helicase dbp8 OS=Emericella nidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712162 ID=CV712162; Name=CV712162; organism=Citrus sinensis; type=EST; length=757bp
CAAATGTGCATGACCCATATGATTAAATGGTCGGATATGTTTGAGAACAA
CATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACCAAAAAAAAAAA
AAAAGGGGAGAAAAGAACCACCACATTAAACAGTACTTGCAAAATCAGGA
AACCCCTTCTTGCCTCGACAAACTTACAAAAACAGAACCTCCTCAAAGAA
GGTCAGCAACGTTTGAAGGCAGCTCCTCAATGACCACGTTATAGAACTTT
TGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCACAAAATTAATGGC
AACACCCTTTCTTCCAAATCGACCACTTCGTCCAATACGGTGAAGGTAGT
TTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAGTGAAACTTGCTGC
ACATCAATACCACGAGCCAACAGATCAGTGGTGATGAGAACACGAGAAGA
ACCAGAGCGAAATTCACGCATAATGATATCTCGGGTGTTCTGATCCATGT
CCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCGCATCTTGTCCGTA
AGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGACACTCTGGGTTAT
GGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGCTTCCATTCTTCCT
TCTCAACATTGACATAAAATTGCTTGATACCCTCAAGGGTGAGTTCATCA
CGTTTAACCAAGATTCTCACAGGCTTGTTCATAAACTTCCTTGTAATCTC
CAAGGCC
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