CV712161

Overview
NameCV712161
Unique NameCV712161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:92..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 3.091e-68
Identity = 123/184 (66.85%), Postives = 149/184 (80.98%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++YDE+ DSFDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ ++ HAC+GG SVRED + LQ G  VVVGTPGRV DM++R+ L+ D++KMFVLDEADEMLS GF +QIYDIFQ LP   QV
Sbjct:   18 SNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSIECHACIGGISVREDMKALQDGPQVVVGTPGRVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQV 201          

HSP 2 Score: 27.335 bits (59), Expect = 3.091e-68
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T KFM
Sbjct:  203 LLSATMPQDVLEVTTKFM 220          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.935e-68
Identity = 127/185 (68.65%), Postives = 150/185 (81.08%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++++E+ D+FD M L+E+LLRGIYAYGFEKPSAIQQR I+P  KG DVI QAQSGTGKTATF   ILQQL+    + QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR + + LQA   H+VVGTPGRVFDML R+ L P +IKMFVLDEAD MLSRGFKDQIY+IFQ L   +QV
Sbjct:   27 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQV 211          

HSP 2 Score: 28.4906 bits (62), Expect = 8.935e-68
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T+KFM
Sbjct:  213 LLSATMPTDVLEVTKKFM 230          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.165e-67
Identity = 124/184 (67.39%), Postives = 149/184 (80.98%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++YDE+ DSFDAM L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  L  CQAL+LAPTRELAQQI+KV+ A+GD++ V+ HAC+GGT+VRED + L  G  VVVGTPGRV DM++R+ L+ D +KMFVLDEADEMLSRGF +QIYDIFQ LP   QV
Sbjct:   18 SNYDEITDSFDAMNLRAELLRGVYAYGFERPSAIQQRAIMPVIKGSDVIAQAQSGTGKTATFSISALQKVDTNLKACQALILAPTRELAQQIQKVVVAIGDFMSVECHACIGGTNVREDIKALNDGPQVVVGTPGRVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQV 201          

HSP 2 Score: 26.1794 bits (56), Expect = 1.165e-67
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + L++T KFM
Sbjct:  203 LLSATMPQDVLDVTTKFM 220          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A1_PONAB (Eukaryotic initiation factor 4A-I OS=Pongo abelii GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.584e-67
Identity = 127/185 (68.65%), Postives = 147/185 (79.46%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++++E+ DS D M L E+LLRGIYAYGFEKPSAIQQR I+   KG DVI QAQSGTGKTATF   ILQQ++  L   QALVLAPTRELAQQI+KV+ ALGDY+G   HAC+GGT+VR E Q++     H++VGTPGRVFDML R+ L P YIKMFVLDEADEMLSRGFKDQIYDIFQ L +  QV
Sbjct:   25 SNWNEIVDSLDDMNLSESLLRGIYAYGFEKPSAIQQRAILSCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQV 209          

HSP 2 Score: 28.4906 bits (62), Expect = 2.584e-67
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T+KFM
Sbjct:  211 LLSATMPSDVLEVTKKFM 228          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.728e-67
Identity = 118/184 (64.13%), Postives = 150/184 (81.52%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++YDE+ DSFD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ+LD  +  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D   L+ G  +VVGTPGR+ DM++R+ L+ D +KMF+LDEADEMLSRGF +QIYDIFQLLP   QV
Sbjct:   41 SNYDEITDSFDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQV 224          

HSP 2 Score: 27.335 bits (59), Expect = 5.728e-67
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T KFM
Sbjct:  226 LLSATMPQDVLEVTTKFM 243          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_ASPNC (ATP-dependent RNA helicase eIF4A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=tif1 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.731e-67
Identity = 120/184 (65.22%), Postives = 148/184 (80.43%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            T+YDEV DSFD+M L+  LLRG+YAYGFE+PSAIQQR I P   G DVI QAQSGTGKTATF    LQ++D  L  CQAL++APTRELAQQI+KV+ A+GD++ ++ HAC+GGT+VR+D   L+AG  VVVGTPGR+ DM+ R+ L+ D +K+F+LDEADEMLSRGF +QIYDIFQLLP   QV
Sbjct:   18 TNYDEVTDSFDSMDLKPELLRGVYAYGFERPSAIQQRAIKPIIAGHDVIAQAQSGTGKTATFSISALQKIDQELKACQALIVAPTRELAQQIQKVVVAIGDFMNIECHACIGGTNVRDDMNALRAGPQVVVGTPGRIHDMIERRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQV 201          

HSP 2 Score: 27.335 bits (59), Expect = 5.731e-67
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T KFM
Sbjct:  203 LLSATMPQDVLEVTTKFM 220          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_CAEEL (Eukaryotic initiation factor 4A OS=Caenorhabditis elegans GN=inf-1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 9.745e-67
Identity = 128/200 (64.00%), Postives = 155/200 (77.50%), Query Frame = 1
Query:  166 DTKMNELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            D  ++ ++  DG     +YD+V +SFD M L+E LLRGIY +GFEKPSAIQ+R IVP   G DVI QAQSGTGKTATF   ILQ++D+     QALV+APTRELAQQI+KVM ALG+YL V +  C+GGTSVR+DQR L+AG+HVVVGTPGRV DM+ R +L    IKMFVLDEADEMLSRGFKDQIY++F+ +P  VQV
Sbjct:    7 DVNVSSVVDADGL-IEGNYDQVVESFDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDDQRKLEAGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQV 205          

HSP 2 Score: 26.5646 bits (57), Expect = 9.745e-67
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP E L++T +FM
Sbjct:  207 LLSATMPSEVLDVTNRFM 224          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.161e-66
Identity = 124/187 (66.31%), Postives = 149/187 (79.68%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGGF 774
            ++YDE+ + F+A+ L+ +LLRGI+AYGFEKPSAIQQRGI P   G D I QAQSGTGKTATF    LQ++DY L  CQ L+LAPTRELAQQI+KV  ALGDY  ++ HACVGGTSVR+D   L++GVH+VVGTPGRVFDML +  LR D +K+F+LDEADEMLSRGFK QI+DIF+ LP  VQV  F
Sbjct:   24 SNYDEIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALF 210          

HSP 2 Score: 26.1794 bits (56), Expect = 2.161e-66
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            +FSATMP E L +T +FM
Sbjct:  209 LFSATMPNEILHLTTQFM 226          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 6.247e-66
Identity = 122/195 (62.56%), Postives = 150/195 (76.92%), Query Frame = 1
Query:  178 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762
            N L   DG+   ++++ V D+FD M L+E LLRG+YAYGFE+PSAIQ R IVP  KG DVI QAQSGTGKTATF   ILQ++D  +   QAL+LAPTRELAQQI+KV+ ALGDY+ +  HAC+GGT+VRED   L  G  VVVGTPGRV+DM+ R++ + D +KMF LDEADEMLSRGFKDQ+Y++FQLLP   Q
Sbjct:   20 NNLNIADGE-IESNWETVIDNFDNMELKEELLRGVYAYGFERPSAIQARAIVPVIKGHDVIAQAQSGTGKTATFSIAILQRIDPSIKAVQALILAPTRELAQQIQKVVIALGDYMKIDCHACIGGTNVREDMAKLNEGAQVVVGTPGRVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQ 213          

HSP 2 Score: 29.6462 bits (65), Expect = 6.247e-66
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP E LE+T+KFM
Sbjct:  216 LLSATMPQEVLEVTKKFM 233          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 6.249e-66
Identity = 116/184 (63.04%), Postives = 150/184 (81.52%), Query Frame = 1
Query:  214 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 765
            ++Y++V DSFD+M L+  LLRG+YAYGFE+PSAIQQR I+P  KG DVI QAQSGTGKTATF    LQ++D  L  CQAL++APTRELAQQI+KV+ A+GD++ +  HAC+GGT++R+D + LQ G  +VVGTPGR+ DM++R+ L+ D +K+F+LDEADEMLSRGF +QIYDIFQLLP   QV
Sbjct:   16 SNYEDVTDSFDSMELKAELLRGVYAYGFERPSAIQQRAIMPIIKGNDVIAQAQSGTGKTATFSISALQKIDPNLKACQALIVAPTRELAQQIQKVVVAIGDFMNINCHACIGGTAIRDDMKALQEGPPIVVGTPGRIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQV 199          

HSP 2 Score: 27.335 bits (59), Expect = 6.249e-66
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            + SATMP + LE+T KFM
Sbjct:  201 LLSATMPQDVLEVTTKFM 218          
The following BLAST results are available for this feature:
BLAST of CV712161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_AJECN3.091e-6866.85ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]
IF4A2_MACFA8.935e-6868.65Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
IF4A_COCIM1.165e-6767.39ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A1_PONAB2.584e-6768.65Eukaryotic initiation factor 4A-I OS=Pongo abelii ... [more]
IF4A_EMENI5.728e-6764.13ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPNC5.731e-6765.22ATP-dependent RNA helicase eIF4A OS=Aspergillus ni... [more]
IF4A_CAEEL9.745e-6764.00Eukaryotic initiation factor 4A OS=Caenorhabditis ... [more]
IF4A_CRYPV2.161e-6666.31Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_USTMA6.247e-6662.56ATP-dependent RNA helicase eIF4A OS=Ustilago maydi... [more]
IF4A_ASPTN6.249e-6663.04ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712161 ID=CV712161; Name=CV712161; organism=Citrus sinensis; type=EST; length=825bp
AGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATCTTCTCCTTCT
CTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTTTAATCACCATC
ATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTT
GATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGG
GCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAA
TGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAG
AAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACT
TGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCT
GCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCC
CTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAAT
GAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTG
GGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTT
GTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTT
ACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGCTGATGAAATGC
TTTCCCGTGGTTTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCA
GCTAAAGTTCAGGTGGGGGGTTTTCTCTGCTACTATGCCTCCTGAGGCCT
TGGAGATTACAAGGAAGTTTATGAA
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