CV712161
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.719e-19 Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 1 Query: 238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 735 +FD G + +L+ + A GF+KP++IQ +G G D++ A +G+GKT ++C GI+ L+ LVLAPTRELA QI+K G ++ GG + R L G +V+ TPGR+ DML + VLDEAD ML GF+ QI I Sbjct: 111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKI 281
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_SCLS1 (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.078e-19 Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 1 Query: 238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750 S+ L + LL I G+++PSA+Q+ I + D+I A +G+GKTA F +L + + A++LAPTRELAQQIE + LG + VGG S+ E L+ G +++ TPGR+ D + R+ L ++DEAD M+ GF++ + I LP Sbjct: 380 SWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALP 558 HSP 2 Score: 22.3274 bits (46), Expect = 2.078e-19 Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 2 Query: 770 VFSATMPPEALEITRKFM 823 +++ATMPP +I +K++ Sbjct: 590 MYTATMPPAVEKIAKKYL 607
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 256 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750 L+ +L + GFE + IQ + D+ QAQ+GTGKT F L + +A+++APTRELA QI K + L + G+KV GG S + +L GV +++GT GR+ D +R+ + +I+ VLDEAD M GF I +F+ +P Sbjct: 16 LKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 1 Query: 241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762 F L ++ + + GF + IQ + G DV QAQ+GTGKT F + L + Q +AL++APTRELA QI AL G+K+ GG + ++L+ GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q Sbjct: 11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQ 191
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762 F L ++ + GF + IQ + +G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 1 Query: 241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762 F L ++ + GF + IQ + +G DV QAQ+GTGKT F + L D + Q +AL++APTRELA QI L G+K+ GG + ++L++GV +++GT GR+ D ++ + I++ VLDEAD M GF I +F+ +P Q Sbjct: 11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_HAES2 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 2336) GN=rhlB PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 1 Query: 241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762 F + L + + I GFE + IQ + KG D+ QAQ+GTGKT F + L Q +AL+LAPTREL QI L G+K GG + +++ G+ +++GT GRV D +++ +R DYI++ VLDEAD M GF I + + P Q Sbjct: 11 FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQ 189
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1 Query: 295 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-----QQLDYGLVQCQALVLAPTRELAQQIEK-VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEADEMLSRGFKDQIYDIF-QLLPAKVQV 765 FEKPSAIQ + + G DVI A++G+GKT ++ +L QQ L+L+PTRELA QIEK ++ ++V C GG+S+ L+ GV ++VGTPGRV D+L S R +K VLDEAD M GF+ Q+ I Q+ P + V Sbjct: 314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTV 480
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750 S++ GL + LL + G+++P+ IQ+ I + D+I A +G+GKTA+F +L + L + A+VLAPTRELAQQIE R LG V + VGG S E L+ G +++ TPGR+ D + R+ L ++DEAD M+ GF++ + I LP Sbjct: 365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISE-LPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750 S++ GL + LL + G+++P+ IQ+ I + D+I A +G+GKTA+F +L + L + A+VLAPTRELAQQIE R LG V + VGG S E L+ G +++ TPGR+ D + R+ L ++DEAD M+ GF++ + I LP Sbjct: 365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISE-LPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545 The following BLAST results are available for this feature:
BLAST of CV712161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712161 ID=CV712161; Name=CV712161; organism=Citrus sinensis; type=EST; length=825bpback to top |