CV712161

Overview
NameCV712161
Unique NameCV712161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:92..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.719e-19
Identity = 63/171 (36.84%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 735
            +FD  G  + +L+ + A GF+KP++IQ +G      G D++  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+K     G    ++     GG    +  R L  G  +V+ TPGR+ DML         +   VLDEAD ML  GF+ QI  I
Sbjct:  111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKI 281          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_SCLS1 (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp28 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.078e-19
Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 1
Query:  238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750
            S+    L + LL  I   G+++PSA+Q+  I    +  D+I  A +G+GKTA F   +L  +       +        A++LAPTRELAQQIE   +     LG    + VGG S+ E    L+ G  +++ TPGR+ D + R+ L        ++DEAD M+  GF++ +  I   LP
Sbjct:  380 SWSESKLPKRLLDVINQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVLVLGQCCYIIMDEADRMIDLGFEESVNKILDALP 558          

HSP 2 Score: 22.3274 bits (46), Expect = 2.078e-19
Identity = 7/18 (38.89%), Postives = 14/18 (77.78%), Query Frame = 2
Query:  770 VFSATMPPEALEITRKFM 823
            +++ATMPP   +I +K++
Sbjct:  590 MYTATMPPAVEKIAKKYL 607          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_SHEFN (ATP-dependent RNA helicase rhlB OS=Shewanella frigidimarina (strain NCIMB 400) GN=rhlB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  256 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750
            L+  +L  +   GFE  + IQ   +       D+  QAQ+GTGKT  F       L            + +A+++APTRELA QI K  + L  + G+KV    GG S    + +L  GV +++GT GR+ D +R+  +   +I+  VLDEAD M   GF   I  +F+ +P
Sbjct:   16 LKPEILAALNENGFEFCTPIQALSLPILLNAKDIAGQAQTGTGKTMAFLVATFNHLLNVAAPESRKATEPRAIIMAPTRELAIQIAKDAKLLAAHTGLKVGIVYGGESYETQRAVLDKGVDILIGTTGRIIDYVRQGVISLSHIQAVVLDEADRMFDLGFIKDIRFLFRRMP 187          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762
            F    L   ++  + + GF   + IQ   +     G DV  QAQ+GTGKT  F +     L       +    Q +AL++APTRELA QI     AL    G+K+    GG    +  ++L+ GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q
Sbjct:   11 FSDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRALIMAPTRELAVQIHSDAEALSHLTGLKLGLAYGGDGYDKQLKVLENGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQ 191          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762
            F    L   ++  +   GF   + IQ   +    +G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q
Sbjct:   11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 59/181 (32.60%), Postives = 90/181 (49.72%), Query Frame = 1
Query:  241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL-------DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762
            F    L   ++  +   GF   + IQ   +    +G DV  QAQ+GTGKT  F +     L       D  + Q +AL++APTRELA QI      L    G+K+    GG    +  ++L++GV +++GT GR+ D  ++  +    I++ VLDEAD M   GF   I  +F+ +P   Q
Sbjct:   11 FSDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPATQ 191          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: RHLB_HAES2 (ATP-dependent RNA helicase rhlB OS=Haemophilus somnus (strain 2336) GN=rhlB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 61/179 (34.08%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  241 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----GLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 762
            F  + L   + + I   GFE  + IQ   +    KG D+  QAQ+GTGKT  F +     L          Q +AL+LAPTREL  QI      L    G+K     GG    +  +++  G+ +++GT GRV D +++  +R DYI++ VLDEAD M   GF   I  + +  P   Q
Sbjct:   11 FSDLALHRIVQQAIKEKGFEFCTPIQALSLPITLKGQDIAGQAQTGTGKTIAFLTATFHHLLQKNNINSSEQPRALILAPTRELVVQIANDANFLVQATGLKTGLAYGGEGYDKQLKVIDRGIDILIGTTGRVIDYVKQGIIRLDYIQVVVLDEADRMFDLGFIRDIRYLLRKCPVPQQ 189          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP5_CANAL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida albicans GN=PRP5 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  295 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL-----QQLDYGLVQCQALVLAPTRELAQQIEK-VMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEADEMLSRGFKDQIYDIF-QLLPAKVQV 765
            FEKPSAIQ + +     G DVI  A++G+GKT ++   +L     QQ          L+L+PTRELA QIEK ++        ++V  C GG+S+      L+ GV ++VGTPGRV D+L   S R   +K     VLDEAD M   GF+ Q+  I  Q+ P +  V
Sbjct:  314 FEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQIRPDRQTV 480          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_NEOFI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=prp28 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750
            S++  GL + LL  +   G+++P+ IQ+  I    +  D+I  A +G+GKTA+F   +L  +   L +             A+VLAPTRELAQQIE   R     LG  V + VGG S  E    L+ G  +++ TPGR+ D + R+ L        ++DEAD M+  GF++ +  I   LP
Sbjct:  365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISE-LPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545          
BLAST of CV712161 vs. ExPASy Swiss-Prot
Match: PRP28_ASPFU (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus fumigatus GN=prp28 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 63/182 (34.62%), Postives = 95/182 (52.20%), Query Frame = 1
Query:  238 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ-----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 750
            S++  GL + LL  +   G+++P+ IQ+  I    +  D+I  A +G+GKTA+F   +L  +   L +             A+VLAPTRELAQQIE   R     LG  V + VGG S  E    L+ G  +++ TPGR+ D + R+ L        ++DEAD M+  GF++ +  I   LP
Sbjct:  365 SWEESGLPKRLLELVDQVGYKEPTPIQRAAIPIALQSRDLIGVAVTGSGKTASFLLPLLVYISE-LPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEARKFTQPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRLLVLSQCCYVIMDEADRMIDLGFEEPVNKILDALP 545          
The following BLAST results are available for this feature:
BLAST of CV712161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_CANGA1.719e-1936.84ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
PRP28_SCLS12.078e-1933.52Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
RHLB_SHEFN2.245e-1933.72ATP-dependent RNA helicase rhlB OS=Shewanella frig... [more]
RHLB_PECCP2.245e-1932.60ATP-dependent RNA helicase rhlB OS=Pectobacterium ... [more]
RHLB_KLEP72.245e-1932.60ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_KLEP32.245e-1932.60ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_HAES22.245e-1934.08ATP-dependent RNA helicase rhlB OS=Haemophilus som... [more]
PRP5_CANAL2.245e-1939.52Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP28_NEOFI2.245e-1934.62Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPFU2.245e-1934.62Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001A04_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712161 ID=CV712161; Name=CV712161; organism=Citrus sinensis; type=EST; length=825bp
AGTTTGGTAACCCTAGCAACTATTTTCTCTTAAATCAATCTTCTCCTTCT
CTTTGAAGAAAAAAGAAAACCAACTCTTTCTCTCGATTTTAATCACCATC
ATCAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTT
GATGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGG
GCAAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAA
TGGGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAG
AAGCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACT
TGACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCT
GCTCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCC
CTGGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAAT
GAGGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTG
GGACAAGTGTTCGCGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTT
GTTGTTGGCACTCCTGGTCGTGTGTTTGACATGCTGCGCCGACAGTCTTT
ACGCCCTGATTACATTAAGATGTTTGTACTGGATGAGGCTGATGAAATGC
TTTCCCGTGGTTTTAAGGATCAGATCTATGATATTTTCCAGCTGCTTCCA
GCTAAAGTTCAGGTGGGGGGTTTTCTCTGCTACTATGCCTCCTGAGGCCT
TGGAGATTACAAGGAAGTTTATGAA
back to top