CX302191

Overview
NameCX302191
Unique NameCX302191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_ANAVT (Glycine dehydrogenase [decarboxylating] OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gcvP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.114e-13
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D HNN+LK APH    L+   W  PYSRE AAYP SW R  KFWP+ GR+D  +G
Sbjct:  905 DTHNNLLKNAPHTIESLIVGEWLHPYSREQAAYPVSWTREYKFWPSVGRIDAAFG 959          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_AKKM8 (Glycine dehydrogenase [decarboxylating] OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gcvP PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.779e-12
Identity = 32/56 (57.14%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            AD  +NVLK +PH   ++  D W  PYSR  AAYP S L   KFWP  GRVDNVYG
Sbjct:  873 ADKEDNVLKNSPHTAEMVSADEWRHPYSRSEAAYPVSGLLIHKFWPYVGRVDNVYG 928          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_NOSP7 (Glycine dehydrogenase [decarboxylating] OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.323e-12
Identity = 31/55 (56.36%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +NVLK APH    L+   W  PYSRE AAYPA W R  KFWPA GR+D  +G
Sbjct:  909 DAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFG 963          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIN (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.963e-12
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYG
Sbjct:  895 DKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYG 949          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_LEPIC (Glycine dehydrogenase [decarboxylating] OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.963e-12
Identity = 31/55 (56.36%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +N LK +PH  +++  D W   Y RE AAYPASWL+  KFWP  GRVDNVYG
Sbjct:  895 DKTDNPLKNSPHTAAMVTSDRWDHLYPRERAAYPASWLKDHKFWPYVGRVDNVYG 949          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_FLAJ1 (Glycine dehydrogenase [decarboxylating] OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.759e-12
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 ADIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            AD  NNVLK APH  ++L  D+W  PYSRE AAYP  ++   KFWP+  RVD+ YG
Sbjct:  877 ADDKNNVLKNAPHTLAMLTSDSWDFPYSREKAAYPLEYIADNKFWPSVRRVDDAYG 932          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_ANASP (Glycine dehydrogenase [decarboxylating] OS=Anabaena sp. (strain PCC 7120) GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.153e-11
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            DI +N LK APH    L+   W  PYSRE AAYPA W R  KFWP+ GR+D  +G
Sbjct:  914 DIQDNSLKNAPHTVESLIVGEWPHPYSREQAAYPAPWTREHKFWPSVGRIDAAFG 968          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_RALPJ (Glycine dehydrogenase [decarboxylating] OS=Ralstonia pickettii (strain 12J) GN=gcvP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.569e-11
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +N LK APH  +++M D W+  Y+RE AAYP + LR  K+WP  GR DNVYG
Sbjct:  908 DREDNPLKHAPHTAAVVMADDWSHKYTREQAAYPVASLRARKYWPPVGRADNVYG 962          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_SYNY3 (Glycine dehydrogenase [decarboxylating] OS=Synechocystis sp. (strain PCC 6803) GN=gcvP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.381e-11
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +N LK APH    L+   W  PYS+E AAYPA W +  KFWPA GR++N YG
Sbjct:  912 DPADNPLKNAPHTAQSLICGEWNHPYSQEEAAYPAPWTKQFKFWPAVGRINNTYG 966          
BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_RALSO (Glycine dehydrogenase [decarboxylating] OS=Ralstonia solanacearum GN=gcvP PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.381e-11
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    4 DIHNNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            D  +N LK APH   ++M D W+  Y+RE AAYP + LR  K+WP  GR DNVYG
Sbjct:  911 DREDNPLKHAPHTAQVVMADDWSHRYTREQAAYPVASLRTRKYWPPVGRADNVYG 965          
The following BLAST results are available for this feature:
BLAST of CX302191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GCSP_ANAVT6.114e-1356.36Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_AKKM81.779e-1257.14Glycine dehydrogenase [decarboxylating] OS=Akkerma... [more]
GCSP_NOSP72.323e-1256.36Glycine dehydrogenase [decarboxylating] OS=Nostoc ... [more]
GCSP_LEPIN3.963e-1256.36Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_LEPIC3.963e-1256.36Glycine dehydrogenase [decarboxylating] OS=Leptosp... [more]
GCSP_FLAJ16.759e-1255.36Glycine dehydrogenase [decarboxylating] OS=Flavoba... [more]
GCSP_ANASP1.153e-1154.55Glycine dehydrogenase [decarboxylating] OS=Anabaen... [more]
GCSP_RALPJ2.569e-1152.73Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]
GCSP_SYNY34.381e-1152.73Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_RALSO4.381e-1152.73Glycine dehydrogenase [decarboxylating] OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionC08018B03SK PhyRootSw1 Citrus sinensis cDNA clone C08018B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302191 ID=CX302191; Name=CX302191; organism=Citrus sinensis; type=EST; length=169bp
GCAGATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTT
GCTCATGGGAGATACATGGACTAAACCATACTCTCGAGAATATGCAGCCT
ATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTACAGGACGC
GTTGACAATGTGTATGGTG
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