CX302191

Overview
NameCX302191
Unique NameCX302191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX302191 vs. ExPASy Swiss-Prot
Match: GCSP_VARPS (Glycine dehydrogenase [decarboxylating] OS=Variovorax paradoxus (strain S110) GN=gcvP PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.473e-11
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   13 NNVLKGAPHPPSLLMGDTWTKPYSREYAAYPASWLRFAKFWPATGRVDNVYG 168
            +N LK APH  + LM   W  PYSRE  A+P + L+ AK+WP  GRVDNVYG
Sbjct:  897 DNPLKHAPHTAASLMAAEWPHPYSRELGAFPLAELKLAKYWPPIGRVDNVYG 948
The following BLAST results are available for this feature:
BLAST of CX302191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GCSP_VARPS7.473e-1155.77Glycine dehydrogenase [decarboxylating] OS=Variovo... [more]

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Properties
Property NameValue
Genbank descriptionC08018B03SK PhyRootSw1 Citrus sinensis cDNA clone C08018B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX302191 ID=CX302191; Name=CX302191; organism=Citrus sinensis; type=EST; length=169bp
GCAGATATCCACAACAATGTCCTGAAGGGGGCGCCTCATCCACCATCTTT
GCTCATGGGAGATACATGGACTAAACCATACTCTCGAGAATATGCAGCCT
ATCCTGCTTCCTGGCTCCGGTTTGCTAAGTTCTGGCCTGCTACAGGACGC
GTTGACAATGTGTATGGTG
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