CX301810

Overview
NameCX301810
Unique NameCX301810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX301810 vs. ExPASy Swiss-Prot
Match: SYFB_THEVO (Phenylalanyl-tRNA synthetase beta chain OS=Thermoplasma volcanium GN=pheT PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 57/225 (25.33%), Postives = 96/225 (42.67%), Query Frame = 1 
Query:   16 DIMEDVAIAYGYNNLEITPPKTLTYGGQQPLNMLSDLLRYELAFSGYTEVLSFALCSHKENFEYLQRPDNGSAVVIANPKTTEFEVARTTLLVGLLKTLSCSKNLPLPIKVFEVSDVVLNKKDSEVGAINERRLAAIYTNVTSGFEHIHGLLDQIMLKLAVDQNRYY-LDSRGCTDPTFFPGMRANXXXXXXXXXXXXAFHPAVIQNFELNYPCSAVELNIEPFL 687
            DI+ED   +YG  N+        T G     N + + +R  +   G+ EV++F L       +Y Q    G  V I NPK+ ++ V R  L + LL  L+ +K  PLP ++FE+ DV+++ K        E  L  +  +  SG      +L   + + +  +++       GC +     G                  HP+ ++NF L  P S  E+NI+  +
Sbjct:  327 DIIEDFIKSYGIENVREQYVSPGTIGSPNIFNEIKEKIRDVVVGLGFQEVMTFVLTG-----KYYQEDFQGE-VRIENPKSEDYSVIRDRLYLNLLDLLARNKKHPLPQRIFEIGDVIVHGK-------QETHLCVMVEDNRSGVSTSKSILTSFLKRFSDHESKISGKKIYGCIE-----GRSGEIFLSGKSIGVIGEVHPSTLENFGLVNPISFFEINIQELI 533
The following BLAST results are available for this feature:
BLAST of CX301810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SYFB_THEVO9.894e-1225.33Phenylalanyl-tRNA synthetase beta chain OS=Thermop... [more]

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Properties
Property NameValue
Genbank descriptionC08013H01SK PhyRootSw1 Citrus sinensis cDNA clone C08013H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301810 ID=CX301810; Name=CX301810; organism=Citrus sinensis; type=EST; length=697bp
AATTCGGCTCGAGGTGATATCATGGAAGATGTGGCGATAGCATATGGATA
CAATAACCTTGAAATCACACCTCCTAAAACATTGACGTATGGTGGCCAAC
AACCGCTTAATATGTTGAGTGATTTATTACGATATGAATTAGCTTTCTCT
GGCTATACTGAAGTCTTGTCTTTTGCTTTGTGCTCACACAAGGAGAATTT
TGAATATTTACAACGACCCGATAATGGATCAGCAGTTGTGATTGCTAATC
CAAAAACCACTGAATTTGAAGTGGCAAGAACAACGTTGTTAGTGGGATTA
TTAAAAACATTGTCGTGTAGTAAGAACTTGCCATTGCCCATTAAAGTTTT
CGAGGTATCCGATGTGGTGTTAAATAAAAAAGATTCAGAAGTTGGTGCAA
TTAATGAACGTCGCCTCGCTGCTATCTACACTAATGTCACCTCCGGCTTT
GAGCACATTCACGGTCTTTTGGATCAAATTATGTTGAAATTAGCAGTGGA
TCAAAACAGATATTACTTGGATTCGCGTGGTTGCACTGACCCAACTTTCT
TCCCAGGAATGAGAGCGAATGTAATTGTCGACGAANAGGTAGTAGGAGTC
ATCGGAGCTTTTCACCCCGCTGTTATTCAAAATTTTGAGTTAAATTATCC
TTGTTCAGCAGTGGAATTGAACATCGAACCTTTTTTGTGAGGAAGTC
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