CX301784

Overview
NameCX301784
Unique NameCX301784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_CANFA (60S ribosomal protein L4 OS=Canis familiaris GN=RPL4 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 50/139 (35.97%), Postives = 70/139 (50.36%), Query Frame = 2 
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRNKAARVALNPHYATVLKRAHAK-ANASKAENDKIAAERRRAHKERSKKFAARRRETYK 418
            LAPGGH+GRF IWT+ AF KLD L+GT+ ++A  KS + LP   + N DL+RI+        L+           K NPL+N    + LNP+  T+ +    + A   K   DK AA      +E+       RR+  K
Sbjct:  240 LAPGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGK 378
[Close]
BLAST of CX301784 vs. ExPASy Swiss-Prot
Match: RL4_XENTR (60S ribosomal protein L4 (Fragment) OS=Xenopus tropicalis GN=rpl4 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.113e-15
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = 2 
Query:    5 LAPGGHLGRFIIWTKGAFEKLDSLFGTYEESAKYKSGFTLPRPLLTNADLARIINSDEIQSVLKPAITTPTVLPKKVNPLRN 250
            LA GGH+GRF IWT+ +F KLD L+GT+ +SAK K+ + LP   +TN DL RI+ S EIQ  L+           K NPL+N
Sbjct:   14 LALGGHVGRFCIWTESSFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKN 95
The following BLAST results are available for this feature:
BLAST of CX301784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL4_CANFA8.192e-1635.9760S ribosomal protein L4 OS=Canis familiaris GN=RP... [more]
RL4_XENTR3.113e-1548.7860S ribosomal protein L4 (Fragment) OS=Xenopus tro... [more]

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Properties
Property NameValue
Genbank descriptionC08013E11SK PhyRootSw1 Citrus sinensis cDNA clone C08013E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301784 ID=CX301784; Name=CX301784; organism=Citrus sinensis; type=EST; length=524bp
GGACCTTGCTCCTGGAGGTCACCTTGGCCGCTTCATCATCTGGACCAAGG
GTGCTTTCGAGAAGTTGGATTCCTTGTTCGGTACCTACGAGGAGAGCGCC
AAGTACAAGAGTGGATTCACCTTACCTCGTCCATTGTTGACCAACGCCGA
TCTTGCCCGTATCATCAACTCTGACGAAATCCAATCTGTCTTGAAGCCTG
CCATTACCACCCCAACTGTCTTACCAAAGAAGGTCAACCCTCTCCGCAAC
AAGGCTGCCCGTGTTGCCTTAAACCCACACTACGCCACCGTCTTGAAGAG
AGCCCACGCCAAGGCTAACGCTTCCAAGGCTGAGAACGATAAGATCGCTG
CTGAACGCAGAAGAGCTCATAAGGAAAGAAGCAAGAAATTCGCTGCCAGA
CGAAGAGAGACATACAAGGCTGCTTCTGCTGAAGGTGAAATCACCTTCTA
AGCAGTTCTCTCCATATTGAACGGCATAAAATAACCAAGTCAATCATTAC
AAAAAAAAAAAAAAAAAAAAAAAA
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