CN191897
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DDX6_CAVPO (Probable ATP-dependent RNA helicase DDX6 (Fragment) OS=Cavia porcellus GN=DDX6 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27 Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + F+ L+ LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L++LD QA+V+ PTRELA Q+ ++ + ++ G KV A GGT++R+D L VHVV+ TPGR+ D++++ + D+++M VLDEAD+ Sbjct: 85 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 239
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DDX6_XENLA (ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26 Identity = 62/155 (40.00%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + F+ L+ LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L++LD QA+V+ PTRELA Q+ ++ + ++ G KV A GGT++R+D L VHVV+ TPGR+ D++++ + D+I+M VLDEAD+ Sbjct: 95 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADK 249
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: RH8_ORYSJ (DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica GN=Os02g0641800 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 62/154 (40.26%), Postives = 94/154 (61.04%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + F+ L+ LL GIY GFE+PS IQ+ I G D++ +A++GTGKTA FC L+++D Q ++L PTRELA Q +V + LG +L ++V GGTS+++D L VH++VGTPGR+ D+ ++ M ++DEAD+ Sbjct: 134 NEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIIRLYQPVHLLVGTPGRILDLTKKGICILKDCSMLIMDEADK 287
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DHH1_ASPTN (ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dhh1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 2 Query: 170 DTKMNELLSTDGQDFFTSYDEVYDS----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 D K + L T +D ++V + F+ ++ L+ GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L++++ + QAL+L PTRELA Q V + LG +LG+ V GGT + +D L VH++VGTPGRV D+ + FV+DEAD+ Sbjct: 20 DAKWKDQLKTPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DDX6_DICDI (Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium discoideum GN=ddx6 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26 Identity = 63/154 (40.91%), Postives = 95/154 (61.69%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + FD + L+ +LLRGI+ G+ KPS IQ++ I G D++ +A++GTGKTA+F L++ D Q L+L PTRELA Q +V + LG Y+ V+V A GGTS+++D L VH++V TPGRV D+ ++ ++DEAD+ Sbjct: 49 NDFDDLHLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGKYMNVQVMASTGGTSLKDDIMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDEADK 202
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DHH1_SCHPO (Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces pombe GN=ste13 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26 Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 2 Query: 245 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 F+ L+ LL GI+ GFE+PS IQ+ I G D++ +A++GTGKTA F L+++D + Q L+L PTRELA Q +V + LG ++ VKV GGT++R+D L VH+VVGTPGRV D+ + FV+DEAD+ Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADK 197
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26 Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 2 Query: 245 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 F+ ++ L+ GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L++++ + + QAL+L PTRELA Q +V + LG +LG+ V GGT +++D L VH++VGTPGR+ D+ + + FV+DEAD+ Sbjct: 51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVSTGGTGLKDDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADK 202
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26 Identity = 68/181 (37.57%), Postives = 101/181 (55.80%), Query Frame = 2 Query: 170 DTKMNELLSTDGQDFFTSYDEVYDS----FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 D K E L+ +D ++V + F+ ++ L+ GI+ GFEKPS IQ+ I G D++ +A++GTGKTA F L++++ + QAL+L PTRELA Q V + LG +LG+ V GGT + +D L VH++VGTPGRV D+ + FV+DEAD+ Sbjct: 20 DAKWKEQLNVPAKDARPQTEDVTATKGLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADK 200
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DDX6_PONAB (Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26 Identity = 61/155 (39.35%), Postives = 98/155 (63.23%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + F+ L+ LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L++LD QA+V+ PTRELA Q+ ++ + ++ G KV A GGT++R D L VHVV+ TPGR+ D++++ + D+++M VLDEAD+ Sbjct: 96 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRGDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 250
BLAST of CN191897 vs. ExPASy Swiss-Prot
Match: DDX6_CHICK (Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.873e-26 Identity = 60/155 (38.71%), Postives = 99/155 (63.87%), Query Frame = 2 Query: 239 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 700 + F+ L+ LL GI+ G+EKPS IQ+ I G D++ +A++GTGK+ + +L++LD QA+V+ PTRELA Q+ ++ + ++ G KV A GGT++R+D L VHVV+ TPGR+ D++++ + ++++M VLDEAD+ Sbjct: 96 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEADK 250 The following BLAST results are available for this feature:
BLAST of CN191897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN191897 ID=CN191897; Name=CN191897; organism=Citrus sinensis; type=EST; length=701bpback to top |