CX301755

Overview
NameCX301755
Unique NameCX301755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRH+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L DQ EA+R K + +R+    RREER+
Sbjct:  116 DRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARK----RREERI 177          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREERL 198
            DRHMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K L DQ EA+R+K + +R+    RREERL
Sbjct:  116 DRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREARK----RREERL 177          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.861e-17
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREER 195
            DRHMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L DQ EA+R K + +R+R+  R++ +
Sbjct:  116 DRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREARKRREERQQAK 180          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIAR 183
            D+H Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KNK+ ++R+ A+
Sbjct:  116 DKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSIKDRRAAK 176          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.951e-12
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASR----ERKIARREERL 198
            D+H+YH++Y++ KGN FKNK+ L+E I K K E  R K L DQ +A+R KNK SR    ER++ +R E L
Sbjct:  116 DKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREERQVVKRAELL 185          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 31/65 (47.69%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREER 195
            D+H+YH +Y + KGN FK+KR L+E I ++KA+  REK L ++ EA+R KN+A+R+R+  R  E+
Sbjct:  116 DKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREER 195
            D+H+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+ KA+R+R+    EE+
Sbjct:  116 DKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEK 180          
BLAST of CX301755 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 DRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLFDQFEAKRAKNKASRERKIARREER 195
            D+H+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+ KA+R+R+    EE+
Sbjct:  116 DKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEK 180          
The following BLAST results are available for this feature:
BLAST of CX301755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RL19_DROME2.631e-1766.6760S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_ICTPU5.861e-1762.1260S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DANRE5.861e-1758.4660S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_DICDI1.351e-1355.7460S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL1.951e-1250.0060S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_YEAST9.684e-1247.6960S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19B_SCHPO9.684e-1246.1560S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO9.684e-1246.1560S ribosomal protein L19-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC08013C04SK PhyRootSw1 Citrus sinensis cDNA clone C08013C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301755 ID=CX301755; Name=CX301755; organism=Citrus sinensis; type=EST; length=476bp
GACAGACACATGTATCATGACATGTACATGAAGGTTAAGGGTAATGTATT
TAAGAATAAGCGAGTTTTGATGGAGAGTATCCACAAGTCGAAGGCTGAGA
AGGCTAGGGAGAAAACTTTGTTTGACCAGTTTGAGGCCAAACGGGCTAAG
AACAAGGCAAGCAGGGAGAGGAAAATTGCTAGGAGGGAGGAACGTTTAGC
CCAGGGGCCTGGAGGAGCACCAACAACTGCACCACCTGCTGCTGCATCTC
AGTCAACTGAGGTACCCAAAAAATCTAAGAAGTAAAACGCCTGACAAAGC
AGTGAAGGATTTTGACCGTAGGTAGCTTGCGTCCTCTGTTACTGTGGCAG
AGCAGTTTTGTTAAAGGAATGTTCTTTTTGGTTTCTTTTGGACCTTGTTA
CTTAAATATTGCAGATGAAAGGAGGTTTCTTAATACTTGCTTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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