CX301746

Overview
NameCX301746
Unique NameCX301746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM5_SOLTU (Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++Y+E
Sbjct:    1 MADQLTEDQISEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM1_SOLTU (Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 45/147 (30.61%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A+Q+ E+ I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++    DA+ NG ID+ EF+ + A       +E+ L+  F+ FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMISEADADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM1_PETHY (Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ +  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM1_DAUCA (Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.039e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ +  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTDDQISEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 43/147 (29.25%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A+Q+ E+ I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F+ FD D+NG I+  ++R +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADVRHVMTNLGEKLTDEEVDEMIREADMDGDGQVNYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.276e-15
Identity = 43/147 (29.25%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ ++ I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A+      +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++V++++++AD DGDG+++YEE
Sbjct:    1 MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/146 (30.14%), Postives = 91/146 (62.33%), Query Frame = 3
Query:  219 QQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFKTE--KYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            Q++ ++ I   K+ F + D +G+G ++ +E            +L++  +++E+ ++   ID++ NG I++SEF+ + A + L +T+  + L+  F+ FD D+NG I+  ELR ++   G  +  ++VD+++K+AD DGDG+++Y+E
Sbjct:   26 QELTQEQIMEFKEAFCLFDKDGDGCITADELATVIR------SLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMA-NQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDE 164          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ +  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ +  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM1_ORYSJ (Calmodulin-1 OS=Oryza sativa subsp. japonica GN=CAM1-1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 44/147 (29.93%), Postives = 85/147 (57.82%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ +  I   K+ F + D +G+G ++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
The following BLAST results are available for this feature:
BLAST of CX301746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
CALM5_SOLTU4.039e-1529.93Calmodulin-5/6/7/8 OS=Solanum tuberosum GN=PCM5 PE... [more]
CALM1_SOLTU4.039e-1530.61Calmodulin-1 OS=Solanum tuberosum GN=PCM1 PE=1 SV=... [more]
CALM1_PETHY4.039e-1529.93Calmodulin-1 OS=Petunia hybrida GN=CAM81 PE=2 SV=2[more]
CALM1_DAUCA4.039e-1529.93Calmodulin-1/11/16 OS=Daucus carota GN=CAM-1 PE=2 ... [more]
CALM2_PETHY5.276e-1529.25Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2[more]
CALM1_ARATH5.276e-1529.25Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CML11_ARATH6.890e-1530.14Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CALM_HORVU6.890e-1529.93Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2[more]
CALM2_SOYBN6.890e-1529.93Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2[more]
CALM1_ORYSJ6.890e-1529.93Calmodulin-1 OS=Oryza sativa subsp. japonica GN=CA... [more]

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Properties
Property NameValue
Genbank descriptionC08013B06SK PhyRootSw1 Citrus sinensis cDNA clone C08013B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301746 ID=CX301746; Name=CX301746; organism=Citrus sinensis; type=EST; length=679bp
AAAGATGCAGTATTGAGGTGAAGGATTTGATTTCCAAGCTTTTGGTTAGA
AATATGTCCAAGAGATACACCGCCGCACAAGCATATAACCATCCTTGGGT
CCAACAACAAGTCGAAGTTGAAAGCAGAGATCTTGAAGTTGATCCTGAAG
TTATTAAAAAACTCGGTGATTTCTTGGAAAGTCAAGCATTGAAGAAAGCA
ATTTTATTATATGTTGCTCAACAAATTCCTGAAAAAGACATCGACCATTT
GAAAAAGCTGTTTGTGATGATTGATACAAATGGTAACGGAACATTGTCAA
TGGAAGAATTTGAGAATGCATTTGATGAATTCCAGCAAAAACTCAACTTA
AACAAGCAATTTTCAAAAGAAGAAGTTGTCAACCTCTTCAAGGCCATCGA
TGCCAATAACAACGGCGTTATTGATTATTCTGAATTTATCGCTGTCTTTG
CTGAACATCATCTCTTTAAAACTGAAAAATATCTTCGTATGGTCTTTGAA
CGTTTCGATTTGGATAAAAATGGAAAGATTAATCAACAAGAACTTAGAAA
ATTACTGAGCGGAGGAAGTTTGGTGCCAATCGATCAAGTTGATAAAATCC
TTAAACAAGCTGATACTGATGGTGATGGAGAGTTGGATTACGAAGAAGTC
TTGGTTTATATCAAGCAATCCAGAACTTG
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