CX301746

Overview
NameCX301746
Unique NameCX301746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_SCHPO (Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 40/145 (27.59%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  219 QQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            + + ++ I   ++ F + D + +G ++  E            +L +  +  E+ ++   +DA+ NG ID++EF+ + A        E+ +R  F+ FD D NG I  +EL  +L+  G  +  ++V  ++++ADTDGDG ++YEE
Sbjct:    4 RNLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMR------SLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEE 142          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM2_SOLTU (Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=PCM2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 34/103 (33.01%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  345 NLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ L+  F  FD D+NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++Y+E
Sbjct:   14 SLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDE 116          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: NCALD_TAEGU (Neurocalcin-delta OS=Taeniopygia guttata GN=NCALD PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  285 NGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFKTEKYLRMVFERFDLDKNGKINQQE-------LRKLLSGGSLVPIDQ------VDKILKQADTDGDGELDYEEVL 653
            +G LSMEEF+  +  F    + +K F++    ++F+  DAN +G ID+ EFI   +     K E+ L+  F  +DLD NG I++ E       + K++S    +P D+       +KI +Q DT+ DG+L  EE +
Sbjct:   40 SGHLSMEEFKKIYGNFFPYGDASK-FAE----HVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: NCALD_CHICK (Neurocalcin-delta OS=Gallus gallus GN=NCALD PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  285 NGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFKTEKYLRMVFERFDLDKNGKINQQE-------LRKLLSGGSLVPIDQ------VDKILKQADTDGDGELDYEEVL 653
            +G LSMEEF+  +  F    + +K F++    ++F+  DAN +G ID+ EFI   +     K E+ L+  F  +DLD NG I++ E       + K++S    +P D+       +KI +Q DT+ DG+L  EE +
Sbjct:   40 SGHLSMEEFKKIYGNFFPYGDASK-FAE----HVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFI 170          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: NCAH_DROME (Neurocalcin homolog OS=Drosophila melanogaster GN=Nca PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 43/136 (31.62%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  285 NGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-----GSLV--------PIDQVDKILKQADTDGDGELDYEEVL 653
            +G LS+EEF+  +  F    + +K F++    ++F+  DAN +G ID+ EF+   +     K E+ L+  F  +DLD NG I++QE+ ++++      GS++        P  + DKI +Q D + DG+L  EE +
Sbjct:   40 SGHLSVEEFKKIYGNFFPYGDASK-FAE----HVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFI 170          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 39/152 (25.66%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  222 QIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFK-TEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEEVLVYIKQS 671
            ++ E+    +++ F + D +G GT+ ++E + A         L  +  KEE+  +   ID    G +++S+F+ V  +    K T++ +   F+ FD D+ GKI+ + L+++    G  +  +++ +++ +AD DGDGE++ +E L  +K++
Sbjct:   24 ELTEEQKQEIREAFDLFDADGTGTIDVKELKVAMRA------LGFEPKKEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLSDEELQEMIDEADRDGDGEVNEQEFLRIMKKT 169          
The following BLAST results are available for this feature:
BLAST of CX301746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
CALM_SCHPO4.622e-1127.59Calmodulin OS=Schizosaccharomyces pombe GN=cam1 PE... [more]
CALM2_SOLTU4.622e-1133.01Calmodulin-2/4 (Fragment) OS=Solanum tuberosum GN=... [more]
NCALD_TAEGU7.883e-1133.09Neurocalcin-delta OS=Taeniopygia guttata GN=NCALD ... [more]
NCALD_CHICK7.883e-1133.09Neurocalcin-delta OS=Gallus gallus GN=NCALD PE=2 S... [more]
NCAH_DROME7.883e-1131.62Neurocalcin homolog OS=Drosophila melanogaster GN=... [more]
CETN2_BOVIN7.883e-1125.66Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08013B06SK PhyRootSw1 Citrus sinensis cDNA clone C08013B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301746 ID=CX301746; Name=CX301746; organism=Citrus sinensis; type=EST; length=679bp
AAAGATGCAGTATTGAGGTGAAGGATTTGATTTCCAAGCTTTTGGTTAGA
AATATGTCCAAGAGATACACCGCCGCACAAGCATATAACCATCCTTGGGT
CCAACAACAAGTCGAAGTTGAAAGCAGAGATCTTGAAGTTGATCCTGAAG
TTATTAAAAAACTCGGTGATTTCTTGGAAAGTCAAGCATTGAAGAAAGCA
ATTTTATTATATGTTGCTCAACAAATTCCTGAAAAAGACATCGACCATTT
GAAAAAGCTGTTTGTGATGATTGATACAAATGGTAACGGAACATTGTCAA
TGGAAGAATTTGAGAATGCATTTGATGAATTCCAGCAAAAACTCAACTTA
AACAAGCAATTTTCAAAAGAAGAAGTTGTCAACCTCTTCAAGGCCATCGA
TGCCAATAACAACGGCGTTATTGATTATTCTGAATTTATCGCTGTCTTTG
CTGAACATCATCTCTTTAAAACTGAAAAATATCTTCGTATGGTCTTTGAA
CGTTTCGATTTGGATAAAAATGGAAAGATTAATCAACAAGAACTTAGAAA
ATTACTGAGCGGAGGAAGTTTGGTGCCAATCGATCAAGTTGATAAAATCC
TTAAACAAGCTGATACTGATGGTGATGGAGAGTTGGATTACGAAGAAGTC
TTGGTTTATATCAAGCAATCCAGAACTTG
back to top