CX301746

Overview
NameCX301746
Unique NameCX301746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_SUBDO (Calmodulin OS=Suberites domuncula PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +D + NG ID+ EF+ + A       +E+ +R  F  FD D NG I+  ELR +++  G  +  ++VD+++++ADTDGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDTDGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADTDGDGQVNYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_PROMN (Calmodulin OS=Prorocentrum minimum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 47/147 (31.97%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+++ A       TE+ L   F+ FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_PLEOS (Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 45/147 (30.61%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ ++  F+ FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDNEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_PFIPI (Calmodulin OS=Pfiesteria piscicida PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 47/147 (31.97%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+++ A       TE+ L   F+ FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_KARMI (Calmodulin OS=Karlodinium micrum PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 47/147 (31.97%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+++ A       TE+ L   F+ FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 46/147 (31.29%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A+      +E+ +R  F  FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAKKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_ALEFU (Calmodulin OS=Alexandrium fundyense PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 47/147 (31.97%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+++ A       TE+ L   F+ FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CDPKO_ARATH (Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 58/225 (25.78%), Postives = 102/225 (45.33%), Query Frame = 3
Query:    3 RCSIEVKDLISKLLVRNMSKRYTAAQAYNHPWVQQQVEVESRDLEVDPEVIKKLGDFLESQALKKAILLYVAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHLFKTEKYLRMVFERFDLDKNGKINQQELRKLLSGGSLVPIDQVDKILK----QADTDGDGELDYEEVLVYIK 665
            + S E K+L+  +L  N   R T  +   HPW++      + +L     V  K+  FL     KK +L  VA  +P ++I  + ++F  +DT+ NG L+ EE  +   +  Q +         +V  L  A D + NG++   EF+ +         +++L+  F+ FD + NG I   EL+  L    L   +  D+ +K      D + DG + ++E    +K
Sbjct:  292 KVSHEAKELVKNMLDANPYSRLTVQEVLEHPWIRNAERAPNVNL--GDNVRTKIQQFLLMNRFKKKVLRIVADNLPNEEIAAIVQMFQTMDTDKNGHLTFEELRDGLKKIGQVV------PDGDVKMLMDAADTDGNGMLSCDEFVTLSIHLKRMGCDEHLQEAFKYFDKNGNGFIELDELKVALCDDKLGHANGNDQWIKDIFFDVDLNKDGRISFDEFKAMMK 508          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ +R  F  FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
BLAST of CX301746 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 46/147 (31.29%), Postives = 86/147 (58.50%), Query Frame = 3
Query:  213 VAQQIPEKDIDHLKKLFVMIDTNGNGTLSMEEFENAFDEFQQKLNLNKQFSKEEVVNLFKAIDANNNGVIDYSEFIAVFAEHHL-FKTEKYLRMVFERFDLDKNGKINQQELRKLLSG-GSLVPIDQVDKILKQADTDGDGELDYEE 647
            +A Q+ E+ I   K+ F + D +G+GT++ +E            +L +  ++ E+ ++   +DA+ NG ID+ EF+ + A       +E+ +R  F  FD D NG I+  ELR +++  G  +  ++VD+++++AD DGDG+++YEE
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMR------SLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 141          
The following BLAST results are available for this feature:
BLAST of CX301746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
CALM_SUBDO3.653e-1631.29Calmodulin OS=Suberites domuncula PE=2 SV=3[more]
CALM_PROMN3.653e-1631.97Calmodulin OS=Prorocentrum minimum PE=2 SV=1[more]
CALM_PLEOS3.653e-1630.61Calmodulin OS=Pleurotus ostreatus GN=CMD1 PE=2 SV=... [more]
CALM_PFIPI3.653e-1631.97Calmodulin OS=Pfiesteria piscicida PE=2 SV=1[more]
CALM_KARMI3.653e-1631.97Calmodulin OS=Karlodinium micrum PE=2 SV=1[more]
CALM_ELEEL3.653e-1631.29Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_ALEFU3.653e-1631.97Calmodulin OS=Alexandrium fundyense PE=2 SV=1[more]
CDPKO_ARATH4.772e-1625.78Calcium-dependent protein kinase 24 OS=Arabidopsis... [more]
CALM_XENLA4.772e-1631.29Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA4.772e-1631.29Calmodulin OS=Torpedo californica PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08013B06SK PhyRootSw1 Citrus sinensis cDNA clone C08013B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301746 ID=CX301746; Name=CX301746; organism=Citrus sinensis; type=EST; length=679bp
AAAGATGCAGTATTGAGGTGAAGGATTTGATTTCCAAGCTTTTGGTTAGA
AATATGTCCAAGAGATACACCGCCGCACAAGCATATAACCATCCTTGGGT
CCAACAACAAGTCGAAGTTGAAAGCAGAGATCTTGAAGTTGATCCTGAAG
TTATTAAAAAACTCGGTGATTTCTTGGAAAGTCAAGCATTGAAGAAAGCA
ATTTTATTATATGTTGCTCAACAAATTCCTGAAAAAGACATCGACCATTT
GAAAAAGCTGTTTGTGATGATTGATACAAATGGTAACGGAACATTGTCAA
TGGAAGAATTTGAGAATGCATTTGATGAATTCCAGCAAAAACTCAACTTA
AACAAGCAATTTTCAAAAGAAGAAGTTGTCAACCTCTTCAAGGCCATCGA
TGCCAATAACAACGGCGTTATTGATTATTCTGAATTTATCGCTGTCTTTG
CTGAACATCATCTCTTTAAAACTGAAAAATATCTTCGTATGGTCTTTGAA
CGTTTCGATTTGGATAAAAATGGAAAGATTAATCAACAAGAACTTAGAAA
ATTACTGAGCGGAGGAAGTTTGGTGCCAATCGATCAAGTTGATAAAATCC
TTAAACAAGCTGATACTGATGGTGATGGAGAGTTGGATTACGAAGAAGTC
TTGGTTTATATCAAGCAATCCAGAACTTG
back to top