CX301740

Overview
NameCX301740
Unique NameCX301740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLDVWDPF  F  +    + S  RE S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP+NAK++QVKA+ ENGV TVTVP
Sbjct:   12 RSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVP 142          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 86/131 (65.65%), Postives = 101/131 (77.10%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLDVWDP   F  S  + + S  RE   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP+NAK+++VKAS ENGV TVTVP
Sbjct:   12 RSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVP 142          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 3
Query:    3 RTNVFDPFSLD-VWDPFDGFLSSALTNAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+N+FDPFSLD +WDPF G L S L+  P S  A ET+ FANARIDWKETP+AHVFKADLPG++          G +L+ISG+R++E+EEKND WHRVERSSG+F+R+FRLP+NAKV+QVKA  ENGV TVTVP
Sbjct:   14 RSNIFDPFSLDEIWDPFFG-LPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVP 146          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 89/138 (64.49%), Postives = 102/138 (73.91%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGF-------LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R N FDPFSLD+WDP DGF        SS+ +  P +  + + FA ARIDWKETP+ HVFKAD+PGL+          G ILQISGERS+EQEEK+DKWHRVERSSGKFLRRFRLP+N K EQ+KAS ENGV TVTVP
Sbjct:    6 RGNAFDPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVP 143          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.752e-44
Identity = 86/131 (65.65%), Postives = 105/131 (80.15%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPF+ D WDPFDG   S +    +S R+T+ FANAR+DWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKAS ENGV TVTVP
Sbjct:    6 RSNVFDPFA-DFWDPFDGVFRSLVP--ATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVP 133          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.288e-44
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+N+FDPFSLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA  ENGV TV VP
Sbjct:   12 RSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVVP 136          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.483e-43
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NV +PFSLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA  ENGV TVTVP
Sbjct:   12 RSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVP 143          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.530e-43
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R+NVFDPFSLDVWDPF  F      + P+S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP+NAKVEQVKAS ENGV TVTVP
Sbjct:   12 RSNVFDPFSLDVWDPFKDF------HFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVP 137          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 7.361e-43
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 3
Query:    3 RTNVFDPFSLDVWDPFDGFLSSALTNAPSS-ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            R++VFDPFSLDVWDPF  F        PSS + E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP+NAKV+QVKAS ENGV TVTVP
Sbjct:   12 RSSVFDPFSLDVWDPFKDF------PFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVP 137          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.613e-43
Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 3
Query:    6 TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            T+VFDPFS+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKAS ENGV TVTVP
Sbjct:   14 TSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVP 138          
The following BLAST results are available for this feature:
BLAST of CX301740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_MEDSA1.752e-4464.1218.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA1.752e-4465.6518.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_CHERU1.752e-4465.6718.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS177_ORYSJ1.752e-4464.4917.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ1.752e-4465.6516.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_HELAN2.288e-4464.1217.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP12_DAUCA1.483e-4363.6418.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP13_SOYBN2.530e-4365.1517.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOYBN7.361e-4365.1517.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE9.613e-4366.1517.6 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionC08013A11SK PhyRootSw1 Citrus sinensis cDNA clone C08013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301740 ID=CX301740; Name=CX301740; organism=Citrus sinensis; type=EST; length=397bp
GAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCCTTTC
GACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTAGGGA
AACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCTCAGG
CTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAA
GTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGAGCAA
GGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTG
GCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAG
GTTAAAGCCAGCAAGGAAAATGGTGTGCAAACAGTGACTGTTCCTAA
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