CX301740

Overview
NameCX301740
Unique NameCX301740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.715e-29
Identity = 70/132 (53.03%), Postives = 83/132 (62.88%), Query Frame = 3
Query:    9 NVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            NV DP S+D W   D F +       S A       N R+DWKETP AHVF ADLPG+R          G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV AS +NGV TVTVP
Sbjct:    8 NVLDPMSVDFWADADPFGA-----VRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVP 134          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.821e-25
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 3
Query:   18 DPFSLDVWDPF-DGFLSSALTNAPSSARETSQF-ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            +P S+D+ +PF D    +A   APS+A   +   + A +DWKET  AHVF AD+PG+R           ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+ +NGV T+T+P
Sbjct:   34 EPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIP 161          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.014e-24
Identity = 50/91 (54.95%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  120 ARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA  ENGV T+T+
Sbjct:   67 ARVDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTL 157          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.435e-24
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  114 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            ++AR+DWKETP+ HV   D+PGL+           R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA  ENGV T+T+
Sbjct:   73 SHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.443e-22
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:   96 RETS-QFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            R+TS   + AR+DWKET + H    D+PGL+            +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA  ENGV T+ +
Sbjct:   62 RDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINL 161          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.199e-22
Identity = 56/129 (43.41%), Postives = 80/129 (62.02%), Query Frame = 3
Query:   12 VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLP-GLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            +FD  + D W+PF  F ++   +A   A +TS FAN  I+ +ET +A+VF+ADLP G++          G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+AS + G+ TVTVP
Sbjct:    6 LFDTLAFDAWNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVP 133          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.555e-21
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 3
Query:  222 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKAS ENGV TVTVP
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVP 58          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.675e-19
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = 3
Query:   81 APSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXG-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            A ++A E +  A AR DWKETP+AHV   D+PG+R            R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A  ++GV TVTVP
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVP 171          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.275e-18
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:   99 ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTV 386
            + +  + AR+DW+ET  AH    D+PG+R           R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS +NGV TV
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTV 168          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.636e-16
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  114 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            + A IDW E+  +H+FK ++PG            G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA  ENGV TV VP
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVP 118          
The following BLAST results are available for this feature:
BLAST of CX301740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS166_ORYSJ2.715e-2953.0316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ1.821e-2544.5318.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN2.014e-2454.9522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA3.435e-2451.6122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.443e-2249.0022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ4.199e-2243.4117.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HSP12_SOYBN3.555e-2182.76Class I heat shock protein (Fragment) OS=Glycine m... [more]
HS219_ORYSJ5.675e-1945.1321.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ6.275e-1845.0023.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH2.636e-1643.4315.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC08013A11SK PhyRootSw1 Citrus sinensis cDNA clone C08013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301740 ID=CX301740; Name=CX301740; organism=Citrus sinensis; type=EST; length=397bp
GAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCCTTTC
GACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTAGGGA
AACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCTCAGG
CTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAA
GTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGAGCAA
GGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTG
GCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAG
GTTAAAGCCAGCAAGGAAAATGGTGTGCAAACAGTGACTGTTCCTAA
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