CX301740

Overview
NameCX301740
Unique NameCX301740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length397
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.873e-16
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   78 NAPSS--ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            NAPS    R+    A    D KE P ++VF  D+PGL+            +L ISGER +E+E++  K+ R+ER  GKF+R+F LP+NA  + + A  ++GV TVTV
Sbjct:   30 NAPSKIYVRDAKAMAATPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVLTVTV 136          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 51/126 (40.48%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   30 LDVWDPFDGFLSSALTNAPSSA-----RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            LDV D   G      T +  SA     R+    A    D KE P A+ F  D+PGL            R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GV TVTV
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTV 145          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.493e-15
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3
Query:   78 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            NAP+    R+    A    D KE P ++VF  D+PG++            +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GV TVTV
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVTV 133          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 40/107 (37.38%), Postives = 65/107 (60.75%), Query Frame = 3
Query:   78 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GV TVTV
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVTV 141          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = 3
Query:   75 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+           R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GV TVTV
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVTV 147          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.497e-14
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   51 DGFLSSALTNAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            DG   +   NAP  S  R+    A    D KE P ++VF+ D+PGL+            +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GV +VTV
Sbjct:   25 DGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVTV 140          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.179e-14
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 3
Query:    3 RTNVFDPFS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            RT  +DPF     L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A  +NGV T+T+P
Sbjct:   16 RTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLTLP 144          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.376e-14
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 3
Query:   78 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTVP 395
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GV  VT+P
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIP 138          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   96 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            R+    A    D KE P ++VF AD+PG++            +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GV  VTV
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVTV 148          
BLAST of CX301740 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.599e-13
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   66 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASKENGVQTVTV 392
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GV TVTV
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVTV 136          
The following BLAST results are available for this feature:
BLAST of CX301740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_SOLPE5.873e-1641.1217.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP22_MAIZE3.807e-1540.4817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA6.493e-1538.3217.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN3.223e-1437.3817.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ3.223e-1440.1818.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN5.497e-1436.2117.9 kDa class II heat shock protein OS=Glycine ma... [more]
SP21_STIAU7.179e-1434.56Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HS177_ARATH9.376e-1437.6117.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI1.599e-1338.6118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_IPONI1.599e-1340.1817.2 kDa class II heat shock protein OS=Ipomoea ni... [more]

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Properties
Property NameValue
Genbank descriptionC08013A11SK PhyRootSw1 Citrus sinensis cDNA clone C08013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301740 ID=CX301740; Name=CX301740; organism=Citrus sinensis; type=EST; length=397bp
GAAGAACCAACGTGTTCGATCCATTTTCATTAGATGTATGGGATCCTTTC
GACGGGTTCTTGTCCTCTGCCCTTACCAACGCGCCGTCTTCGGCTAGGGA
AACATCCCAATTCGCCAATGCAAGAATTGACTGGAAAGAGACTCCTCAGG
CTCATGTATTCAAGGCTGATCTTCCAGGGCTGAGGAAAGAAGAAGTGAAA
GTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGGGAGAGGAGCAA
GGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGGAGCAGTG
GCAAGTTCCTGAGGAGGTTCAGGTTGCCCGACAATGCTAAGGTGGAGCAG
GTTAAAGCCAGCAAGGAAAATGGTGTGCAAACAGTGACTGTTCCTAA
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