CX301616

Overview
NameCX301616
Unique NameCX301616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.084e-39
Identity = 88/191 (46.07%), Postives = 111/191 (58.12%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFF-TDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A DPD LQD+C+AD  + I +NGF CKP S +T+ DFF     K     +    AVT  +V     +NT GVSL RID   GG+NPPHTHPR TE   V  G++ VG +TT N  F+K +  G VF+ PR LIH+Q N  K  PA+ I  FN+Q PG      TLF  TP I + VLT +F++    I  I
Sbjct:   21 AYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVIFVLEGELDVGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKI 211          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 85/195 (43.59%), Postives = 112/195 (57.44%), Query Frame = 3
Query:  114 SHASDPDPLQDVCLAD---LNAPISINGFPCKPASEVTSDDFFTDFSKNP-TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            S A DPD LQDVC+AD   L  P+ +NG PCK    VT++DFF D   N   T +     VT   V   P +NT GVS+ RID    G++PPHTHPR TE   V  G + VG VTT N  F++ ++ G VF+ PR L+HFQ N G   A  I  FN+Q PG      TLF   PP+ ++ L ++F+V   ++ +I
Sbjct:   20 SLAGDPDMLQDVCVADYKSLRGPLRLNGIPCKRLENVTANDFFFDGLTNAGNTTNAVGSLVTAASVERLPGLNTMGVSMARIDYAPWGLSPPHTHPRATEIMFVAEGTLDVGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESI 214          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 86/194 (44.33%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  120 ASDPDPLQDVCLA----DLNAPISINGFPCKPASEVTSDDFF-TDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A+DP+P+QD C+A       A  +  GFPCKPAS V SDDFF    +   +T + F  ++  G+V  FPA+NT GV++ R+DL  GG+NP H+HPR  E   V  G++LVG V+T   ++SKV+  G  F IPR L+HFQ N G   A  + +FN+Q PGV  + T LF   P I + VL KSF+V  ++I  +
Sbjct:   34 AADPEPIQDFCVAVPRAGGEASPAYPGFPCKPASAVVSDDFFFAGLAAAGSTDNPFGASLKPGNVEAFPALNTLGVAINRVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLL 227          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.026e-39
Identity = 88/194 (45.36%), Postives = 119/194 (61.34%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAP-ISINGFPCKPASEVTSDDFFTD-FSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV---TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            +S+P PLQD C+ADL+   +S+NG  CKP SE   D  F+   +K   T      AVT  +V+ +P  NT GVS+ R+D   GG NPPH HPR TE GIV +G++LVG++    + N  +S+V+  G  FLIPR L+HFQ NVGK  A+ +  FN+Q+P V     TLF + PPI   VLTK+ RV   V+  +
Sbjct:   23 SSNPHPLQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGSNPPIPKPVLTKALRVEAGVVELL 216          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39
Identity = 87/194 (44.85%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTD--FSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            ASDP PLQD C+ADLN+P+ +NGF CK     ++DDFF      K   T +     VTL +V   P +NT G+S+ R+D    G+NPPHTHPR TE   V  G + VG VT+N  N   SKVL  G VF+ P  LIHFQ N     PA  I   ++QNPGV      +F + PPIS+++L K+F+V   +I+ +
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGSNPPISDDILMKAFQVDKKIIDLL 217          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.487e-38
Identity = 88/196 (44.90%), Postives = 117/196 (59.69%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNP--TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTN-----NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            ASDP  LQD C+AD  + + +NGF CK   +VT++DFF   +      T +    AVT   V+  P +NT G+S  RID    G NPPHTHPR TE   V +G +LVG VT+N     N  F+K+L PG VF+ P+ LIHFQLN G  PA  I   ++QNPGV      +F +TPPI ++VL K+F +  D ++ I
Sbjct:   27 ASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGSTPPILDDVLAKAFMIDKDQVDWI 222          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 82/195 (42.05%), Postives = 117/195 (60.00%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDF---SKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A++P PLQD C+ADLN+ + +NGF CK  + V++DDFF          T  +     +TL +V   P +NT G+S+ R+D    G+NPPHTHPR TE   V  G + VG VT+N  N  FSKVL  G VF+ P+ LIHFQ N+    PA      ++QNPG+      +F + PPIS+++L K+F+V   +I+ +
Sbjct:   23 AAEPSPLQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRSNPPISDDILAKAFQVDKKIIDLL 217          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 89/197 (45.18%), Postives = 117/197 (59.39%), Query Frame = 3
Query:  123 SDPDPLQDVCLADLN--------APISINGFPCKPASEVTSDDFF-TDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            +DP+P+QD C+A +         A  +  GFPCKPAS V SDDFF    +    T + F   VT  +   FP +NT GVS+ R+DL  GG+NP H+HPR TE   V  G+VL G V+T   F+SKVL  G  F++PR +IHFQ NVG   A  I  FN+Q PGV  + +TLF + P I + VL KSF+V   +I  +
Sbjct:   25 ADPEPVQDFCVAVVPRAGDAAAAACPAYPGFPCKPASTVVSDDFFFAGLAVASDTDNRFGFNVTAANAETFPGLNTLGVSIGRVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLL 221          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.014e-37
Identity = 88/191 (46.07%), Postives = 113/191 (59.16%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKN-PTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTT--NNTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVIN 680
            ASDP PLQD C+AD+++P+ +NGF C    EV +D FF     + P   +     VTL +V   P +NT G+S+ RID    G NPPHTHPR TE   V  G + VG VT+  NNT FSKVL  G VF+ P+ LIHFQ N     PA  I   ++QNPG       +F + PPIS+EVL K+F+V    I+
Sbjct:   22 ASDPSPLQDFCVADMHSPVRVNGFACLNPMEVNADHFFKAAKLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTID 212          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.325e-37
Identity = 85/169 (50.30%), Postives = 104/169 (61.54%), Query Frame = 3
Query:  108 FPSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTD-FSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLF 611
            F S ++DPD LQD+C+ADL + I INGFPCK A+ VTS DFF+   +K   T + F   VT  +V   P +NT GVSL RID   GG+NPPHTHPR TE   V  G + VG +TT N   S+ L  G VF  P+ L+HFQ N G  PA+ I  FN+Q PG      TLF
Sbjct:   18 FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVVFVLEGTLDVGFLTTANKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLF 186          
The following BLAST results are available for this feature:
BLAST of CX301616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL24_ARATH1.084e-3946.07Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL32_ORYSJ3.154e-3943.59Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL37_ORYSJ4.119e-3944.33Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GER3_WHEAT7.026e-3945.36Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GL82_ORYSJ9.176e-3944.85Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL41_ORYSJ3.487e-3844.90Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL81_ORYSJ7.768e-3842.05Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL38_ORYSJ7.768e-3845.18Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ1.014e-3746.07Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL21_ARATH1.325e-3750.30Germin-like protein subfamily 2 member 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC08011F12SK PhyRootSw1 Citrus sinensis cDNA clone C08011F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301616 ID=CX301616; Name=CX301616; organism=Citrus sinensis; type=EST; length=686bp
AATTCGGCACGAGGCTTAATTGATCCTACTCACAGTTAACCATGTATTCT
TCATCAGCGTCACTCTTTGAGCTGCTATGCGGCCTGATAGTGTTATTGCT
TCTCCCTTTCCCTTCCCATGCAAGTGACCCTGATCCTTTACAAGACGTCT
GTCTTGCGGACTTGAATGCCCCCATCTCTATCAATGGTTTCCCCTGCAAA
CCTGCTTCAGAAGTAACTTCTGATGATTTCTTCACTGATTTTTCCAAAAA
TCCGACCACATTTGATGTCTTTAAGCGTGCAGTTACACTTGGTGATGTTT
CTGGCTTTCCAGCGGTCAATACTCAAGGAGTTTCACTCTTCCGAATTGAC
CTGGATGTAGGTGGAATAAACCCACCTCATACACATCCTCGTGGAACTGA
GGCTGGCATTGTTACTCGAGGAAAGGTGCTTGTTGGGTTAGTAACAACTA
ATAATACCTTTTTCTCAAAGGTTTTGACTCCTGGGATGGTGTTCTTAATT
CCCAGAGCACTGATTCACTTCCAGCTAAATGTTGGAAAGGGGCCGGCCAC
CTTTATACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGACTCACTCA
CTACTCTTTTTGATACAACACCCCCAATTTCCAATGAAGTGCTGACCAAA
TCGTTTCGAGTAAGTGATGATGTGATAAATGCCATC
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