CX301616

Overview
NameCX301616
Unique NameCX301616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 3
Query:  114 SHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPP 626
            SHAS    +QD C+AD  AP    G+ CK  ++VT +DF ++       T ++ K AVT    + FP VN  G+SL R+DL  GG+ P HTHP  +E  +V +G ++ G V ++NT + K L  G + + P+ L+HFQ+N G  PA   P F++ +PG+      LF    P
Sbjct:   16 SHAS----VQDFCVADYKAPDGPAGYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASDNTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPGLQILDFALFKNDLP 183          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.222e-26
Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  138 LQDVCLADLNAPISINGFPCK-PASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPP 626
            +QD C+ADL AP    GF CK PAS   +D  F+       T ++ K AVT   V+ FP VN  G+S+ R+DL VGG+ P HTHP  +E  IV +G +  G V ++NT + + L  G + + P+ L+HFQ+N G+ PA     F + +PG+      LF    P
Sbjct:   25 VQDFCVADLAAPEGPAGFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASDNTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPGLQILDFALFKNDLP 188          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 69/191 (36.13%), Postives = 99/191 (51.83%), Query Frame = 3
Query:  105 PFPSHASDPDPLQDVCLADLNA--PISIN---GFPCKPASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSG-FPAVNTQGVSLFRIDLDV-GGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSF 656
            P  +   DPD +QD C+ D     P+ +     +PC+  + +T+ DF     +    F        +      FP ++T G+S  R DL   GG+NPPH HPR TE  +V  G+V  G V +    F+KVL  G V + PRA++HFQLNVG  PAT    FN++NPG+     T+F +   I   VL ++F
Sbjct:   17 PAMAARGDPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDSGGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAF 205          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 62/164 (37.80%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  138 LQDVCLADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPP 626
            +QD C+AD   P S +G+ CK   +VT +DF FT       T ++ K AVT      +  +N  GVSL R+DL  GG+ P HTHP  +E  +V +G +  G +++ N  + K L  G   + P+ L+HFQLN GKGPA     F + +PG+      LF    P
Sbjct:   22 VQDFCVADPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP 185          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  126 DPDPLQDVCLADLNAPIS-----INGFPCKPASEVTSDDFFTDF---SKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            DPD L D C+AD  A  +     +NG  C   +   +D F T     + NP        A      +  P  N QG+++ RIDL  GG+ PPH+HPR +EA +V  G VLVG   T+   ++++L  G  F+ PRA++HF  N+    PA  +   N+Q+PG      + F T P + +EVL K+F+++   +  I
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRI 218          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.592e-25
Identity = 65/184 (35.33%), Postives = 100/184 (54.35%), Query Frame = 3
Query:  138 LQDVCLADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            +QD C+AD   P + +G+ CK   +VT +DF F+   K   T +V K AVT      F  +N   VSL R+DL  GG+ P HTHP  +E  +V +G +  G +++ N  + K L+ G   + P+ L+HFQLN GKGPA     F + +PG+      LF    P  +E++  +  +SD+ +  +
Sbjct:   22 VQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFANDLP--SELVEATTFLSDEEVKKL 203          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.385e-25
Identity = 66/163 (40.49%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  108 FPSHASDPDPLQDVC--LADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGV 587
            F S + D D +QD C       +   ING+PCK  +++T+ DF  T  ++   T +  +  VTL     FP +NT G+S+ R DL+  G  P H+HPR +E   V +G V  G V TNN  F  VL  G VF+ P+ L+HF L+ G  PAT    +N+QNPGV
Sbjct:   13 FLSVSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGV 175          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25
Identity = 60/172 (34.88%), Postives = 94/172 (54.65%), Query Frame = 3
Query:  132 DPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLT 647
            D +QD C+A+L    +  G+PC     V + DF         T ++   AVT G V+ FPA+N  G+S  R+DL   G+ P HTHP  +E   V  G +  G +++ N+ + + L PG V + P+ L+HFQ+N GK PA  +  F++ +PG+      LF  T  +S E+++
Sbjct:   17 DSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANT--LSTELVS 186          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 66/188 (35.11%), Postives = 94/188 (50.00%), Query Frame = 3
Query:  111 PSHASDPDPLQDVC--LADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFD-VFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTK--SFR 659
            P   SD  PLQDVC         + +NGF CK  S + + DF T    +    D + + +  +   + FP +NT G+S+ R D+ V G   PH+HPR +E   V  G V+ G   T    F K L  G VF+ PR L+HF +N G G AT   + N+QNPGV      +F     ++  ++ +  SFR
Sbjct:   19 PEIISDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEVAEGLMARMLSFR 206          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.866e-24
Identity = 64/187 (34.22%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  123 SDPDPLQDVCLA---DLNAPISINGFPCKPASEVTSDDFFTDFSKNP--TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGK-GPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVS 665
            SDPDPLQD C++     +  I +NG  CK  ++ +  DF T     P  T    F   VT+   +  P +NT G+++ R+D    G+ PPH HPR +E  +   G +LVG V T+   F++ L PG  F+ P+ LIHF  N+     A  +   ++QNPG      + F + PP   EVL  ++ ++
Sbjct:   18 SDPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDTSGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDIN 204          
The following BLAST results are available for this feature:
BLAST of CX301616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
AB19A_PRUPE1.795e-2638.37Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
ABP20_PRUPE5.222e-2639.63Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL24_ORYSJ6.821e-2636.13Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GL33_ARATH1.985e-2537.80Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GL31_ORYSJ1.985e-2534.18Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GLP1_SINAL2.592e-2535.33Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GL34_ARATH3.385e-2540.49Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GLP1_BRANA9.849e-2534.88Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL111_ORYSJ1.680e-2435.11Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL11_ARATH2.866e-2434.22Germin-like protein subfamily 1 member 1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionC08011F12SK PhyRootSw1 Citrus sinensis cDNA clone C08011F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301616 ID=CX301616; Name=CX301616; organism=Citrus sinensis; type=EST; length=686bp
AATTCGGCACGAGGCTTAATTGATCCTACTCACAGTTAACCATGTATTCT
TCATCAGCGTCACTCTTTGAGCTGCTATGCGGCCTGATAGTGTTATTGCT
TCTCCCTTTCCCTTCCCATGCAAGTGACCCTGATCCTTTACAAGACGTCT
GTCTTGCGGACTTGAATGCCCCCATCTCTATCAATGGTTTCCCCTGCAAA
CCTGCTTCAGAAGTAACTTCTGATGATTTCTTCACTGATTTTTCCAAAAA
TCCGACCACATTTGATGTCTTTAAGCGTGCAGTTACACTTGGTGATGTTT
CTGGCTTTCCAGCGGTCAATACTCAAGGAGTTTCACTCTTCCGAATTGAC
CTGGATGTAGGTGGAATAAACCCACCTCATACACATCCTCGTGGAACTGA
GGCTGGCATTGTTACTCGAGGAAAGGTGCTTGTTGGGTTAGTAACAACTA
ATAATACCTTTTTCTCAAAGGTTTTGACTCCTGGGATGGTGTTCTTAATT
CCCAGAGCACTGATTCACTTCCAGCTAAATGTTGGAAAGGGGCCGGCCAC
CTTTATACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGACTCACTCA
CTACTCTTTTTGATACAACACCCCCAATTTCCAATGAAGTGCTGACCAAA
TCGTTTCGAGTAAGTGATGATGTGATAAATGCCATC
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