CX301616

Overview
NameCX301616
Unique NameCX301616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 60/163 (36.81%), Postives = 89/163 (54.60%), Query Frame = 3
Query:  141 QDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVT-TNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPP 626
            QD C+ADL    +  G+PCK AS    D  +   +    T ++ K AVT   V  FP VN  G+S  R+D+ VGG+ P HTHP  +E   VT+G V  G +T ++NT +++ L  G + + P+ L+H+Q N G+  A  +  F+  NPG+  +   LF    P
Sbjct:   26 QDFCVADLTCSDTPAGYPCK-ASVGAGDFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSSSNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPGLQITDYALFANNLP 187          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  138 LQDVCLADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPP 626
            +QD C+A+L    +  G+PC     V + DF F+       T ++   AVT    + FP +N  G+S  R+DL   G+ P HTHP  +E   V  G +  G V++ N  + + L PG V + P+ L+HFQ+N GK  A+ +  FN+ NPG+      LF  + P
Sbjct:   19 VQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANSLP 182          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISING--FPCKPASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFR 659
            A DPD L D  +     P++I G  F      +V    F T  +  P +F      VT   ++ FPA+N Q VS   +      +NPPHTHPR  E  +V  G + VG + T N  +++ L  G +F+ P+ ++HFQ N G  PA  +  F +  PGV     T+F T   I + VL KSF+
Sbjct:   25 AGDPDILTDYVIPANGNPMNITGDFFTFTGFRKV----FNTSSAPEPNSF-----TVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFK 195          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 3
Query:  141 QDVCLADLNAPISI-NGFPCKPASEVTSDDFFTDFSKNP-TTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV-TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIS 632
            QD C+A+L       +G+ C+PA+ VT+ DF++     P      F  ++    V  +PAVN  G+S  R+D+  GG+ P HTHP G+E   V  G ++ G + +++N  + K ++ G +F+ P+ L+HFQ N G   A     +++ NPG+      LF    P S
Sbjct:   29 QDFCVANLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSSDNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPGLQILDYALFANNLPTS 195          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKR------AVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A DPD L D  +     P   N      A  +T D F FT F +NP + ++          VT   ++ FPA+N Q VS   +      +NPPHTHPR  E  ++  G + VG V T N  +++ L  G +F+ P+ ++HFQ N G  PA  +  F +   G+     T+F T   I + VL KSF+     I  +
Sbjct:   23 AGDPDILTDYVI-----PAGSN------AENITGDFFTFTGF-RNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKL 204          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  138 LQDVCLAD-LNAPISINGFPCKPASEVTSDDF-FTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGV 587
            + D C+A+   A  + +GF CK  ++VT+ DF ++  +K   T ++   AVT   V  FP V   GV+L R+DL  GG+ P HTHP  +E   V  G +L   +++ N  + K L PG V + P+ L+ FQ   GK  A  +     +NPG+
Sbjct:   24 VNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITGK-IAPGLCELRQRNPGL 174          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 59/192 (30.73%), Postives = 88/192 (45.83%), Query Frame = 3
Query:  120 ASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDFSKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLV--TTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPISNEVLTKSFRVSDDVINAI 686
            A+DPD L D  +     P  I+G      +  T  +  T  S +P      K  VT    + FPA+  Q VS   +    G +NPPH HPR +E  +V +G +LVGLV    N T +++ L  G +F+ P+ ++HFQ N G    A     F +  PG       LF +   I + +L KS       ++ +
Sbjct:   25 AADPDILTDFVVPSDTDPSGIDG------AFFTYKNLVTGNSGDPA-----KLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKSMHTDQATVDQL 203          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 54/172 (31.40%), Postives = 80/172 (46.51%), Query Frame = 3
Query:  105 PFPSHASDPDPLQDVCLADLNAPISINGFPCKPASEVTSDDFFTDF--SKNPTTFDVFKRAVTLGDVSGFPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNNT-FFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLF 611
            P PS A+ P+ +  +    LNAP  ++         +  + F  DF  SK   T     + V     + FPAV    V++    ++  GIN PHTHPR TE   +  GK   G    N   F    L  GM  + P+  IHF++N+   PA F+  FN ++PGV  + ++ F
Sbjct:   40 PLPSSAASPELVAQL----LNAPSELDRIKL-----LKDNQFVFDFKNSKLGVTQGTGGKTVATSRTN-FPAVIGHNVAMTVGFIEACGINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of CX301616 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  306 FPAVNTQGVSLFRIDLDVGGINPPHTHPRGTEAGIVTRGKVLVGLVTTNN-TFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLF 611
            FPAV    +++    ++  GIN PHTHPR TE   + +G+   G    N  TF   +L  GM  + P+  IHF++N+   PA F+  FN ++PGV  + ++ F
Sbjct:   86 FPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of CX301616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL814_ORYSJ5.404e-2336.81Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GL31_ARATH1.572e-2234.76Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GL92_ORYSJ4.282e-2034.62Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL813_ORYSJ1.627e-1932.93Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]
GL93_ORYSJ4.008e-1832.65Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GLP1_IPONI1.289e-1635.53Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL91_ORYSJ5.417e-1530.73Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO1.576e-1431.40Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO5.989e-1435.92Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC08011F12SK PhyRootSw1 Citrus sinensis cDNA clone C08011F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301616 ID=CX301616; Name=CX301616; organism=Citrus sinensis; type=EST; length=686bp
AATTCGGCACGAGGCTTAATTGATCCTACTCACAGTTAACCATGTATTCT
TCATCAGCGTCACTCTTTGAGCTGCTATGCGGCCTGATAGTGTTATTGCT
TCTCCCTTTCCCTTCCCATGCAAGTGACCCTGATCCTTTACAAGACGTCT
GTCTTGCGGACTTGAATGCCCCCATCTCTATCAATGGTTTCCCCTGCAAA
CCTGCTTCAGAAGTAACTTCTGATGATTTCTTCACTGATTTTTCCAAAAA
TCCGACCACATTTGATGTCTTTAAGCGTGCAGTTACACTTGGTGATGTTT
CTGGCTTTCCAGCGGTCAATACTCAAGGAGTTTCACTCTTCCGAATTGAC
CTGGATGTAGGTGGAATAAACCCACCTCATACACATCCTCGTGGAACTGA
GGCTGGCATTGTTACTCGAGGAAAGGTGCTTGTTGGGTTAGTAACAACTA
ATAATACCTTTTTCTCAAAGGTTTTGACTCCTGGGATGGTGTTCTTAATT
CCCAGAGCACTGATTCACTTCCAGCTAAATGTTGGAAAGGGGCCGGCCAC
CTTTATACCTATTTTCAATACTCAAAATCCTGGCGTTTCGGACTCACTCA
CTACTCTTTTTGATACAACACCCCCAATTTCCAATGAAGTGCTGACCAAA
TCGTTTCGAGTAAGTGATGATGTGATAAATGCCATC
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