CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: BSL1_ARATH (Serine/threonine-protein phosphatase BSL1 OS=Arabidopsis thaliana GN=BSL1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.333e-15
Identity = 47/116 (40.52%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENP-----YLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSK----VYDIFCEIFCCLPLVYILD 322
            V GD HGQF D++ +F   G+PS         YLF GD+VDRG  S+E I  LLA K   P  +HL RGNHEA  +N L+GF  E +           +  F ++F  LPL  +++
Sbjct:  581 VFGDLHGQFGDLMRLFDEYGFPSTAGDITYIDYLFLGDYVDRGQHSLETITLLLALKIEYPENVHLIRGNHEAADINALFGFRLECIERMGENDGIWAWTRFNQLFNYLPLAALIE 696          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: YY06_CAEEL (Putative serine/threonine-protein phosphatase C27B7.6 OS=Caenorhabditis elegans GN=C27B7.6 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 2.514e-14
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPL 307
            V GD HGQ  D+L      G P D   YLF GD+VDRG  S+EV   L   K      +HL RGNHE + +N +YGF+ E++   +S ++ +F ++F  L +
Sbjct:   62 VFGDIHGQLGDLLQFTNEVGRPPDFQ-YLFLGDYVDRGPNSLEVTVWLFCMKILFSKKVHLLRGNHEVRRVNTMYGFKEEMMRKRNSHLWKVFNDVFAELSI 162          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: BSL3_ARATH (Serine/threonine-protein phosphatase BSL3 OS=Arabidopsis thaliana GN=BSL3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 45/116 (38.79%), Postives = 62/116 (53.45%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENP-----YLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSK----VYDIFCEIFCCLPLVYILD 322
            + GD HGQF D++ +F   G PS         YLF GD+VDRG  S+E I  LLA K    + +HL RGNHEA  +N L+GF  E +     +    V+     +F  LPL  +++
Sbjct:  706 IFGDLHGQFGDLMRLFDEYGSPSTAGDISYIDYLFLGDYVDRGQHSLETITLLLALKVEYQHNVHLIRGNHEAADINALFGFRIECIERMGERDGIWVWHRINRLFNWLPLAALIE 821          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: BSL2_ORYSJ (Serine/threonine-protein phosphatase BSL2 homolog OS=Oryza sativa subsp. japonica GN=BSL2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.600e-14
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENP-----YLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSK----VYDIFCEIFCCLPLVYILD 322
            + GD HGQF D++ +F   G PS         YLF GD+VDRG  S+E I  LLA K   P  +HL RGNHEA  +N L+GF  E +     +     +     +F  LPL  +++
Sbjct:  708 IFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPLNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRMNRLFNWLPLAALIE 823          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: BSL2_ARATH (Serine/threonine-protein phosphatase BSL2 OS=Arabidopsis thaliana GN=BSL2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.629e-13
Identity = 45/111 (40.54%), Postives = 59/111 (53.15%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENP-----YLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSK----VYDIFCEIFCCLPL 307
            + GD HGQF D++ +F   G PS         YLF GD+VDRG  S+E I  LLA K    + +HL RGNHEA  +N L+GF  E +     +    V+     +F  LPL
Sbjct:  717 IFGDLHGQFGDLMRLFDEYGSPSTAGDISYIDYLFLGDYVDRGQHSLETISLLLALKVEYQHNVHLIRGNHEAADINALFGFRIECIERMGERDGIWVWHRINRLFNWLPL 827          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPP7I_ARATH (Serine/threonine-protein phosphatase 7 inactive homolog OS=Arabidopsis thaliana GN=At5g10900 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDS---KVYDIFCEIFCCLPLVYIL 319
            V GD HGQ +D+L IF   G PS    ++FNG+++ RGS+S+EV   LLAWK   P  + L RG+ E +   +   F  ++   Y      +Y    + F  LPL  ++
Sbjct:  227 VVGDLHGQLHDLLKIFDQSGRPSQNQCFVFNGNYIGRGSWSLEVFLVLLAWKIMMPENVILLRGSSETRVSAEELDFLKDICDRYGEHGPMLYSKCIDCFKMLPLASVI 335          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: YT91_CAEEL (Putative serine/threonine-protein phosphatase C06A1.3 OS=Caenorhabditis elegans GN=C06A1.3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.601e-11
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPL 307
            V GD H Q+ D+  +F L G   +E   +F GD+VDRG   +EV+  L   K    + ++L RGNHE  S+NK+YGF  E  + Y   ++  F   F  +P+
Sbjct:   90 VIGDIHAQYQDMNRLFDLIGRVPEEK-LMFLGDYVDRGPQGIEVLILLFCLKIRYRDRIYLLRGNHETPSVNKIYGFYVECQYKYGIGLWWDFQSCFNRMPM 190          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
BSL1_ARATH1.333e-1540.52Serine/threonine-protein phosphatase BSL1 OS=Arabi... [more]
YY06_CAEEL2.514e-1440.20Putative serine/threonine-protein phosphatase C27B... [more]
BSL3_ARATH5.600e-1438.79Serine/threonine-protein phosphatase BSL3 OS=Arabi... [more]
BSL2_ORYSJ5.600e-1438.79Serine/threonine-protein phosphatase BSL2 homolog ... [more]
BSL2_ARATH1.629e-1340.54Serine/threonine-protein phosphatase BSL2 OS=Arabi... [more]
PPP7I_ARATH6.191e-1335.78Serine/threonine-protein phosphatase 7 inactive ho... [more]
YT91_CAEEL2.601e-1137.25Putative serine/threonine-protein phosphatase C06A... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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