CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1A_MOUSE (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Mus musculus GN=Ppp1ca PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   61 ICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIRYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVD 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1A_HUMAN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Homo sapiens GN=PPP1CA PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   61 ICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVD 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   61 ICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVD 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.018e-23
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   61 ICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECVSINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVD 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.018e-23
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    + RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYYDLLRLFEYGGFPPESN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIID 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_NEUCR (Serine/threonine-protein phosphatase PP1 OS=Neurospora crassa GN=ppp-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.330e-23
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    + RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   61 ICGDIHGQYYDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIID 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_EMENI (Serine/threonine-protein phosphatase PP1 OS=Emericella nidulans GN=bimG PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.737e-23
Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    + RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYYDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFVLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIID 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.268e-23
Identity = 52/107 (48.60%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F+  GYP + N YLF GD+VDRG  S+E I  LLA+K        L RGNHE  S+N++YGF  E    Y  K++  F + F CLP+V I+D
Sbjct:   59 ICGDIHGQYYDLLRLFEYGGYPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYSENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVVAIVD 164          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.962e-23
Identity = 53/107 (49.53%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGDTHGQF D+L +F+  GYP   N YLF GD+VDRG  SVE I  LLA+K        L RGNHE  S+N++YGF  E    Y  +V+ IF + F CLP+  ++D
Sbjct:   58 ICGDTHGQFSDLLRLFEYGGYPPAAN-YLFLGDYVDRGKQSVETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKKRYSVRVWKIFTDCFNCLPVAALID 163          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2BA_DICDI (Calcineurin subunit A OS=Dictyostelium discoideum GN=canA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.869e-23
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFK--LKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGDTHGQFYD++ IF+  + G P++ N YLF GD+VDRG FS+EVI  L A K   PN   L RGNHE + + + + F+ E LH Y  +VYD   E F  LPL  +++
Sbjct:  135 VCGDTHGQFYDLIKIFENDIGGNPANTN-YLFLGDYVDRGYFSMEVIIYLYACKINYPNTFFLLRGNHECRHLTEYFTFKEECLHKYSEEVYDFITESFNALPLAALMN 242          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1A_MOUSE7.796e-2447.66Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_HUMAN7.796e-2447.66Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1A_BOVIN7.796e-2447.66Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP1G_CANFA1.018e-2347.66Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP12_YEAST1.018e-2346.73Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]
PP1_NEUCR1.330e-2346.73Serine/threonine-protein phosphatase PP1 OS=Neuros... [more]
PP1_EMENI1.737e-2346.73Serine/threonine-protein phosphatase PP1 OS=Emeric... [more]
PP13_DROME2.268e-2348.60Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP13_ARATH2.962e-2349.53Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP2BA_DICDI3.869e-2349.54Calcineurin subunit A OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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