CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1B_HUMAN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVD 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1B_DROME (Serine/threonine-protein phosphatase beta isoform OS=Drosophila melanogaster GN=flw PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P   N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y+ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYTDLLRLFEYGGFPPAAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNVKLWKTFTDCFNCLPVAAIID 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVD 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYADLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVD 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F + F CLP+  I+D
Sbjct:   60 ICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVD 165          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P   N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ +V+ +F + F CLP+  ++D
Sbjct:   71 ICGDIHGQYSDLLRLFEYGGFPPSAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHECASINRIYGFYDECKRRFNVRVWKVFTDCFNCLPVAALID 176          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.275e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F E F CLP+  ++D
Sbjct:   72 ICGDIHGQYGDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKCFTECFNCLPVAALID 177          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ +++ +F + F CLP+  ++D
Sbjct:   72 ICGDIHGQYSDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALID 177          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 48/107 (44.86%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  GYP   N YLF GD+VDRG  S+E I  LLA+K   P+ + L RGNHE   +N++YGF  E    ++ +++ IF + F CLP+  ++D
Sbjct:   63 ICGDIHGQYQDLLRLFEYGGYPPSAN-YLFLGDYVDRGKQSLETICLLLAYKIRYPSKIFLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALID 168          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P   N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++ +F + F CLP+  ++D
Sbjct:   67 ICGDIHGQYSDLLRLFEYGGFPPAAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKVFTDTFNCLPVAAVID 172          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1B_HUMAN3.275e-2245.79Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_DROME3.275e-2246.73Serine/threonine-protein phosphatase beta isoform ... [more]
PP1B_CHICK3.275e-2245.79Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CANFA3.275e-2245.79Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_BOVIN3.275e-2245.79Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP14_ARATH3.275e-2244.86Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP11_TOBAC3.275e-2245.79Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_ORYSJ4.278e-2243.93Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP19_ARATH4.278e-2244.86Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP15_ARATH4.278e-2244.86Serine/threonine-protein phosphatase PP1 isozyme 5... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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