CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    +  K++  F + F CLP+  ++D
Sbjct:   61 ICGDIHGQYNDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRFSIKLWKTFTDCFNCLPIAALID 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.278e-22
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    +  K++  F + F CLP+  ++D
Sbjct:   61 ICGDIHGQYNDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASINRIYGFYDECKRRFSIKLWKTFTDCFNCLPIAALID 166          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.297e-22
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQ+ D+L +F+  GYP   N YLF GD+VDRG  S+E I  LLA+K   P+ + L RGNHE   +N++YGF  E    ++ +++ IF + F CLP+  ++D
Sbjct:   55 VCGDIHGQYQDLLRLFEYGGYPPAAN-YLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVSALID 160          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.297e-22
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F   GYP   N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    +  K++  F + F CLP+  ++D
Sbjct:   58 ICGDVHGQYSDLLRLFDYGGYPPQAN-YLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHECASVNRIYGFYDECKRRFSVKLWKTFTDCFNCLPVSALID 163          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.297e-22
Identity = 48/107 (44.86%), Postives = 69/107 (64.49%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    + RGNHE  S+N++YGF  E    Y+ +++  F + F CLP+  I+D
Sbjct:   58 ICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIRLWKTFTDCFNCLPVAAIVD 163          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP12_TRYBB (Serine/threonine-protein phosphatase PP1(5.9) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.530e-22
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F L G+P D N Y+F GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y  +++  F + F C+P+  +++
Sbjct:   99 ICGDVHGQYTDLLRLFDLGGFPPDAN-YIFLGDYVDRGDQSLETICLLLAYKLSFPETFFLLRGNHECSSINRIYGFFDECKRRYSVRLWKQFTDTFNCMPVAGLVE 204          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP12_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Arabidopsis thaliana GN=TOPP2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P   N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    +  +++ +F + F CLP+  ++D
Sbjct:   67 ICGDIHGQYSDLLRLFEYGGFPPTAN-YLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDSFNCLPVAAVID 172          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPE1_HUMAN (Serine/threonine-protein phosphatase with EF-hands 1 OS=Homo sapiens GN=PPEF1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.625e-21
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY---DSKVYDIFCEIFCCLPLVYILD 322
            +CGD HG+  D+  IF   G PS+ NPY+FNGDFVDRG  S+E++  L       PN +HL RGNHE   MN  YGF  E+LH Y     ++  I  E +  LP+  I+D
Sbjct:  169 ICGDLHGKLDDLFLIFYKNGLPSERNPYVFNGDFVDRGKNSIEILMILCVSFLVYPNDLHLNRGNHEDFMMNLRYGFTKEILHKYKLHGKRILQILEEFYAWLPIGTIVD 278          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2B1_YEAST (Serine/threonine-protein phosphatase 2B catalytic subunit A1 OS=Saccharomyces cerevisiae GN=CNA1 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.625e-21
Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+YD+L +F++ G P+ E  YLF GD+VDRG+FS E +  L + K  N     + RGNHE K +   + F+ E+LH YD +VYD  C  F  LPL  +++
Sbjct:  116 ICGDIHGQYYDLLKLFEVGGDPA-EIDYLFLGDYVDRGAFSFECLIYLYSLKLNNLGRFWMLRGNHECKHLTSYFTFKNEMLHKYDMEVYDACCRSFNVLPLAALMN 221          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.625e-21
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQF D+L +F+  GYP   N YLF GD+VDRG  S+E I  LLA+K        L RGNHE  S+N++YGF  E    Y+ +++  F E F CLP+  ++D
Sbjct:   58 ICGDVHGQFPDLLRLFEYGGYPPAAN-YLFLGDYVDRGKQSIETICLLLAYKVKYKFNFFLLRGNHECASINRVYGFYDECKRRYNVRLWKTFTECFNCLPVSALID 163          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GLC7A_CAEEL4.278e-2244.86Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR4.278e-2244.86Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP1_PHAVU7.297e-2245.79Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP1_MAIZE7.297e-2245.79Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]
PP11_ACECL7.297e-2244.86Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP12_TRYBB9.530e-2243.93Serine/threonine-protein phosphatase PP1(5.9) OS=T... [more]
PP12_ARATH1.245e-2143.93Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PPE1_HUMAN1.625e-2145.45Serine/threonine-protein phosphatase with EF-hands... [more]
PP2B1_YEAST1.625e-2144.86Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP16_ARATH1.625e-2146.73Serine/threonine-protein phosphatase PP1 isozyme 6... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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