CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP11_TRYBB (Serine/threonine-protein phosphatase PP1(4.8) OS=Trypanosoma brucei brucei PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.123e-21
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F L G+P D N Y+F GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    Y  +++  F + F C+P+  +++
Sbjct:   99 ICGDVHGQYTDLLRLFDLGGFPPDAN-YIFLGDYVDRGDQSLERICLLLAYKLSFPETFFLLRGNHECSSINRIYGFFDECKRRYSVRLWKQFTDTFNCMPVAGLVE 204          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPE1_MOUSE (Serine/threonine-protein phosphatase with EF-hands 1 OS=Mus musculus GN=Ppef1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.773e-21
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY---DSKVYDIFCEIFCCLPLVYILD 322
            +CGD HG+  D++ IF   G PS+ NPY+FNGDFVDRG+ S+E++  LL      P+ +HL RGNHE   MN  YGF  E+L  Y     K+  +  E++  LP+  I+D
Sbjct:  172 ICGDLHGKLDDLMLIFYKNGLPSENNPYVFNGDFVDRGNNSMEILMILLVCFLVYPSDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGRKILQVLEEVYTWLPIGTIID 281          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPE2_HUMAN (Serine/threonine-protein phosphatase with EF-hands 2 OS=Homo sapiens GN=PPEF2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 50/110 (45.45%), Postives = 65/110 (59.09%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY---DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQ  D++ IF   G PS E  Y+FNGDFVDRG  SVE++  L A+    P   HL RGNHE   +N  YGF  EV++ Y     ++     ++FC LPL  ++D
Sbjct:  176 VCGDLHGQLDDLIFIFYKNGLPSPERSYVFNGDFVDRGKDSVEILMILFAFMLVYPKEFHLNRGNHEDHMVNLRYGFTKEVMNKYKVHGKEILRTLQDVFCWLPLATLID 285          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPE1_RAT (Serine/threonine-protein phosphatase with EF-hands 1 OS=Rattus norvegicus GN=Ppef1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY---DSKVYDIFCEIFCCLPLVYILD 322
            +CGD HG+  D++ IF   G PS++NPY+FNGDFVDRG+ S+E++  LL      P  +HL RGNHE   MN  YGF  E+L  Y     K+  +  E++  LP+  I+D
Sbjct:  170 ICGDLHGKLDDLMLIFYKNGLPSEKNPYVFNGDFVDRGNNSMEILMILLVSFLVYPTDLHLNRGNHEDFMMNLRYGFTKEILQKYKLHGKKILQVLEELYTWLPIGTIID 279          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2B1_CRYNV (Serine/threonine-protein phosphatase 2B catalytic subunit A1 OS=Cryptococcus neoformans var. grubii GN=CNA1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQ+YD++ +F++ G P+D   YLF GD+VDRG FS+E +  L + K + P+ + L RGNHE + +   + F+ E  H Y   VY+   E FC LPL  +++
Sbjct:  117 VCGDIHGQYYDLMKLFEVGGNPADTR-YLFLGDYVDRGYFSIECVLYLWSLKMWYPDTLFLLRGNHECRHLTDYFTFKLECKHKYSETVYNACMESFCNLPLAAVMN 222          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.729e-21
Identity = 49/108 (45.37%), Postives = 72/108 (66.67%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY-DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +FK+ G   D N YLF GD+VDRG +SVE +  L+A K   PN + + RGNHE++ + ++YGF  E L  Y ++ V+  F ++F  LPL  ++D
Sbjct:   72 VCGDIHGQFHDLMELFKIGGSCPDTN-YLFMGDYVDRGYYSVETVTLLVALKIRYPNRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALID 178          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP12_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            +CGD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF       Y+ +++  F + F CLP   ++D
Sbjct:   58 ICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRGKQSLETICLLLAFKVKYPKNFFLLRGNHECASINRIYGFYDVCKRRYNIRLWKTFTDCFNCLPACALVD 163          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPQ1_YEAST (Serine/threonine-protein phosphatase PPQ OS=Saccharomyces cerevisiae GN=PPQ1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYIL 319
            V GD HGQF D+L I KL G PSD N YLF GD+VDRG  S+E I  LL +K    +   + RGNHE+ ++ K+YGF  E      SKV+ +F ++F  LPL  I+
Sbjct:  298 VVGDVHGQFNDLLRILKLSGVPSDTN-YLFLGDYVDRGKNSLETILLLLCYKIKYKDNFFMLRGNHESANVTKMYGFYDECKRRLSSKVWKMFVDVFNTLPLAAII 402          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2BC_HUMAN (Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform OS=Homo sapiens GN=PPP3CC PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G PS+   YLF GD+VDRG FS+E +  L + K  +P  + L RGNHE + +   + F+ E    Y  +VYD   E F CLPL  +L+
Sbjct:   83 VCGDIHGQFFDLMKLFEVGGSPSNTR-YLFLGDYVDRGYFSIECVLYLWSLKINHPKTLFLLRGNHECRHLTDYFTFKQECRIKYSEQVYDACMETFDCLPLAALLN 188          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP1_BRANA (Serine/threonine-protein phosphatase PP1 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    8 GDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            GD HGQ+ D+L +F+  GYP   N +LF GD+VDRG  S+E I  LLA+K   P+ ++L RGNHE   +N++YGF  E    ++ +++ IF + F CLP+  ++D
Sbjct:    1 GDIHGQYQDLLRLFEYGGYPPSAN-FLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALID 104          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP11_TRYBB2.123e-2143.93Serine/threonine-protein phosphatase PP1(4.8) OS=T... [more]
PPE1_MOUSE2.773e-2144.55Serine/threonine-protein phosphatase with EF-hands... [more]
PPE2_HUMAN3.621e-2145.45Serine/threonine-protein phosphatase with EF-hands... [more]
PPE1_RAT3.621e-2144.55Serine/threonine-protein phosphatase with EF-hands... [more]
PP2B1_CRYNV3.621e-2142.99Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP2A1_NEUCR4.729e-2145.37Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP12_ACECL8.067e-2143.93Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PPQ1_YEAST1.376e-2048.11Serine/threonine-protein phosphatase PPQ OS=Saccha... [more]
PP2BC_HUMAN1.376e-2043.93Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP1_BRANA1.376e-2043.81Serine/threonine-protein phosphatase PP1 (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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