CX301609

Overview
NameCX301609
Unique NameCX301609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length326
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2AB_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Mus musculus GN=Ppp2cb PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY-DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G   D N YLF GD+VDRG +SVE +  L+A K   P  + + RGNHE++ + ++YGF  E L  Y ++ V+  F ++F  LPL  ++D
Sbjct:   54 VCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2AB_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY-DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G   D N YLF GD+VDRG +SVE +  L+A K   P  + + RGNHE++ + ++YGF  E L  Y ++ V+  F ++F  LPL  ++D
Sbjct:   54 VCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY-DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G   D N YLF GD+VDRG +SVE +  L+A K   P  + + RGNHE++ + ++YGF  E L  Y ++ V+  F ++F  LPL  ++D
Sbjct:   54 VCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 47/108 (43.52%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTY-DSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G   D N YLF GD+VDRG +SVE +  L+A K   P  + + RGNHE++ + ++YGF  E L  Y ++ V+  F ++F  LPL  ++D
Sbjct:   54 VCGDVHGQFHDLMELFRIGGKSPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVD 160          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2A2_YEAST (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH22 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/108 (42.59%), Postives = 71/108 (65.74%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDS-KVYDIFCEIFCCLPLVYILD 322
            +CGD HGQF+D+L +FK+ G P  +  YLF GD+VDRG +SVE +  L+A K   P+ + + RGNHE++ + ++YGF  E L  Y S  V+ +F ++F   P+  ++D
Sbjct:  122 ICGDVHGQFHDLLELFKIGG-PCPDTNYLFMGDYVDRGYYSVETVSYLVAMKVRYPHRITILRGNHESRQITQVYGFYDECLRKYGSANVWKMFTDLFDYFPVTALVD 228          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP13_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 47/105 (44.76%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    8 GDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            GD HGQ+ D+L +F+  G+P + N YLF GD+VDRG  S+E I  LLA+K   P    L RGNHE  S+N++YGF  E    ++ K++  F + F CLP+  ++D
Sbjct:   60 GDIHGQYSDLLRLFEYGGFPPEAN-YLFLGDYVDRGRQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKSFTDCFNCLPVAALID 163          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PPP7_ARATH (Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCC---LPLVYIL 319
            V GD HGQ +D+L + K  G+P     Y+FNGD+VDRG++ +E    LL+WK   P+ ++L RGNHE+K    +YGFE EVL  Y  K   ++ +   C   LPL  I+
Sbjct:   81 VVGDIHGQLHDLLFLLKDTGFPCQNRCYVFNGDYVDRGAWGLETFLVLLSWKVLMPDRVYLLRGNHESKYCTSMYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASII 189          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2BC_MOUSE (Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform OS=Mus musculus GN=Ppp3cc PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQF+D++ +F++ G PS+   YLF GD+VDRG FS+E +  L + K  +P  + L RGNHE + + + + F+ E    Y   VYD     F CLPL  +L+
Sbjct:   83 VCGDVHGQFFDLMKLFEVGGSPSNTR-YLFLGDYVDRGYFSIECVLYLWSLKINHPKTLFLLRGNHECRHLTEYFTFKQECRIKYSEMVYDACMHTFDCLPLAALLN 188          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2B3_DROME (Serine/threonine-protein phosphatase 2B catalytic subunit 3 OS=Drosophila melanogaster GN=CanA-14F PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQFYD++ +F++ G P+    YLF GD+VDRG FS+E +  L + K   P  + L RGNHE + + + + F+ E    Y  +VYD   + F CLPL  +++
Sbjct:  161 VCGDIHGQFYDLMKLFEIGGSPATTK-YLFLGDYVDRGYFSIECVLYLWSLKITYPQTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMN 266          
BLAST of CX301609 vs. ExPASy Swiss-Prot
Match: PP2B2_DROME (Serine/threonine-protein phosphatase 2B catalytic subunit 2 OS=Drosophila melanogaster GN=Pp2B-14D PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 2
Query:    2 VCGDTHGQFYDVLNIFKLKGYPSDENPYLFNGDFVDRGSFSVEVIXXLLAWKAFNPNCMHLTRGNHEAKSMNKLYGFEGEVLHTYDSKVYDIFCEIFCCLPLVYILD 322
            VCGD HGQFYD++ +F++ G P+    YLF GD+VDRG FS+E +  L + K   P  + L RGNHE + + + + F+ E    Y  +VYD   + F CLPL  +++
Sbjct:  153 VCGDIHGQFYDLMKLFEVGGSPASTK-YLFLGDYVDRGYFSIECVLYLWSLKITYPQTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMN 258          
The following BLAST results are available for this feature:
BLAST of CX301609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP2AB_MOUSE2.347e-2043.52Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_HUMAN2.347e-2043.52Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_BOVIN2.347e-2043.52Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_CHICK2.347e-2043.52Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A2_YEAST2.347e-2042.59Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP13_TOBAC2.347e-2044.76Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PPP7_ARATH4.004e-2043.12Serine/threonine-protein phosphatase 7 OS=Arabidop... [more]
PP2BC_MOUSE4.004e-2042.99Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP2B3_DROME4.004e-2042.06Serine/threonine-protein phosphatase 2B catalytic ... [more]
PP2B2_DROME4.004e-2042.06Serine/threonine-protein phosphatase 2B catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionC08011F05SK PhyRootSw1 Citrus sinensis cDNA clone C08011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301609 ID=CX301609; Name=CX301609; organism=Citrus sinensis; type=EST; length=326bp
GGTTTGTGGCGATACTCATGGTCAATTCTATGATGTCCTCAATATTTTCA
AGCTCAAAGGATATCCTTCTGATGAGAATCCCTACTTGTTCAACGGAGAT
TTCGTCGATAGAGGCTCTTTCTCAGTTGAAGTTATTGNTNGCCTTTTAGC
TTGGAAGGCTTTCAACCCCAACTGCATGCATCTTACTAGAGGAAATCATG
AAGCTAAGAGCATGAATAAACTTTACGGATTTGAAGGAGAAGTTCTTCAT
ACGTACGATTCCAAGGTCTATGATATTTTCTGCGAAATCTTCTGCTGCCT
TCCTTTGGTTTACATCCTCGACACAA
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