CX301607

Overview
NameCX301607
Unique NameCX301607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 2
Query:   62 TASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVKIGQS 427
            +A  RK R + +AA    RRK +++ LS +L ++  V+ +PVR+ D V ++RG FK   GKVV+V  K+  I VE  TR  + GQT++  I  S V I  + + DK R+ +++R+ R + G S
Sbjct:    6 SAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMIVDVDLSDKARQKLIERRKRGQHGSS 128          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = 2
Query:   77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNR 409
            K RK  + A    R K M++PLSK+L +++ V+ +PVRK D V+++RGKF+  EG V +V  KK  I+V+  T + + G+     I  S V ITKL ++DK R+ I++R+ +
Sbjct:   11 KQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERRKK 122          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 2
Query:   74 RKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRK 403
            RK RKA + A   +R   MS  LS DL + F+ RS PVRK D V ++RG F+ TEGKV  V  K Y + V+  +  K +G  ++  I  SN+ +T++ + D+ R   L+RK
Sbjct:    6 RKQRKALYTAPLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLTEIYLDDERRNQALNRK 116          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14
Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2
Query:   59 TTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNRVK 415
            +++  RK  KA   A    RR+ +++PLSKDL ++  +R IPVR  D V +LRG FK T GKV  V  K+  I+V+  +  K +G+ ++  I  S V I +L + DK R A +D+  + +
Sbjct:    6 SSSQPRKQHKALTKAPWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVIVELDQSDKARVAAIDKTRKAR 125          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  116 RRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVKIGQSKG 433
            R K++ +PLS +L Q+  ++ I VRK D V ++RG FK  EGKV  V  KK  IHVE  T  KA+G  +   I  S V +T+L + D  RK +++RK +V +   +G
Sbjct:   25 RSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVTELDLSDPRRKELVERKKQVVVSGQEG 131          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 2
Query:   77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRK 403
            K RKA F      R K  ++PLSK+L +++ V+ +PVRK D VR++RG +K  EGKVV +  ++  ++VE   R KA+   ++  I  S V I KL + DK R+ I++R+
Sbjct:   11 KQRKALFNMPLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMIIKLDLSDKWRRKIIERR 120          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 2
Query:   71 RRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDR 400
            R++ R  +  A   ER K + + LSKDL +++  R+I VRK D+VR++RG+F   EG+V+EV  K+  I V+  T  KA+G  + V I  SNV IT   ++D+ RK IL+R
Sbjct:   10 RKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMITDFGEVDEVRKKILER 120          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 2
Query:   77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVK 415
            K RK  +   +  R K +++ LS+DL +++ ++ I +RK D V+++RG     EGKVVEV RK+  + +E  T+ KA+G  ++V + AS V ITKL   DK R   ++RK +++
Sbjct:    8 KQRKLVYNLPNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIITKLDTGDKERMDAIERKRKMR 121          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_SULTO (50S ribosomal protein L24P OS=Sulfolobus tokodaii GN=rpl24p PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 2
Query:  113 ERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGK--FKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVK 415
            +R K +++ LSK+L Q++ ++ + +RK D V+V+RG     + EGKVVEV RK   I +E  TR KA+G  ++  I AS V ITKL + D  RK I++RK + +
Sbjct:   20 QRHKLLTAKLSKELQQQYGIKRLAIRKGDTVKVMRGDKDVLNFEGKVVEVNRKTGRIAIEGLTRKKADGTPVYRWIHASKVIITKLDLSDAKRKEIIERKRKAR 123          
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   59 TTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNR 409
            T+   R+ R + + A    R K  ++ LS DL ++  V+ +PVR+ D V ++RG FK   GKVV+V  KK  I+VE  TR  + GQT++  I  S V I  +   DK R+ I+ R+ +
Sbjct:    5 TSIQPRRQRLSLYTAPLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMIIDIDTSDKIRQKIIQRRKK 122          
The following BLAST results are available for this feature:
BLAST of CX301607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL24_PYRCJ1.120e-1438.2150S ribosomal protein L24P OS=Pyrobaculum calidifo... [more]
RL24_IGNH45.559e-1440.1850S ribosomal protein L24P OS=Ignicoccus hospitali... [more]
RL24_METST7.261e-1440.5450S ribosomal protein L24P OS=Methanosphaera stadt... [more]
RL24_CALMQ9.483e-1437.5050S ribosomal protein L24P OS=Caldivirga maquiling... [more]
RL24_THEPD1.238e-1341.1250S ribosomal protein L24P OS=Thermofilum pendens ... [more]
RL24_STAMF1.238e-1340.0050S ribosomal protein L24P OS=Staphylothermus mari... [more]
RL24_ARCFU1.617e-1342.3450S ribosomal protein L24P OS=Archaeoglobus fulgid... [more]
RL24_SULAC2.759e-1337.7250S ribosomal protein L24P OS=Sulfolobus acidocald... [more]
RL24_SULTO6.146e-1342.3150S ribosomal protein L24P OS=Sulfolobus tokodaii ... [more]
RL24_PYRIL6.146e-1337.2950S ribosomal protein L24P OS=Pyrobaculum islandic... [more]

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Properties
Property NameValue
Genbank descriptionC08011F03SK PhyRootSw1 Citrus sinensis cDNA clone C08011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301607 ID=CX301607; Name=CX301607; organism=Citrus sinensis; type=EST; length=763bp
ATCTTTATCAAGGAATATTTCCACATAATCAGCAAAGATGACCAAATTAA
ACAACAATACAACTGCTTCCCGAAGAAAGAACAGAAAGGCTCACTTCGCA
GCCACTTCTGTCGAAAGAAGGAAGAGAATGAGCAGTCCTTTATCCAAGGA
CTTATTCCAGCGATTCCACGTTCGCTCCATCCCTGTTAGAAAGGACGACG
AGGTCCGTGTGCTTCGTGGAAAGTTCAAGTCTACTGAGGGAAAGGTGGTG
GAAGTCTATCGTAAGAAGTACGTGATTCATGTCGAGAAGTGCACTCGCGA
CAAGGCTAACGGACAAACCATCCACGTGGGCATTGATGCATCAAACGTTG
AAATCACTAAGTTAAAGATGGACAAGAATCGCAAAGCTATCTTAGATCGC
AAGAATCGTGTGAAGATCGGTCAAAGCAAAGGTGCCGTTCCTTCCTCCTT
ACATGACAACATGGCTGGTGTTGATTAAAGTAGAAGTTGTAACGTTTGCT
CAAATCTATCAACACTACGCGAAGCCCTTGCTCCTGCTAATAATGTAAAT
CGCATCAACAAGAATATTGGCAGTTTGGAAATATTTCTAAAATAAAGAAT
GCATCACCCTCGTGCCGAATTCGGCACGAGGGTTTTCTGTCAATCAACTT
GCTGCCCTAGTTACAAAAGCAGGAGAGAAGCTTGGGCTTGACGTAAAACC
ATATCTGTCCCAACCCACGAGTAGAAGCAGAGGAGCATTATTACATGCAA
GCACACAAACTCA
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