CX301607
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_PYRCJ (50S ribosomal protein L24P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 2 Query: 62 TASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVKIGQS 427 +A RK R + +AA RRK +++ LS +L ++ V+ +PVR+ D V ++RG FK GKVV+V K+ I VE TR + GQT++ I S V I + + DK R+ +++R+ R + G S Sbjct: 6 SAQPRKQRLSLYAAPLHLRRKLLNAKLSPELQKKLGVKRLPVRRGDTVLIMRGDFKGVTGKVVKVDLKRVRIFVEGATRTNSRGQTVYYPIHPSKVMIVDVDLSDKARQKLIERRKRGQHGSS 128
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_IGNH4 (50S ribosomal protein L24P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl24p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14 Identity = 45/112 (40.18%), Postives = 71/112 (63.39%), Query Frame = 2 Query: 77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNR 409 K RK + A R K M++PLSK+L +++ V+ +PVRK D V+++RGKF+ EG V +V KK I+V+ T + + G+ I S V ITKL ++DK R+ I++R+ + Sbjct: 11 KQRKFLYNAPLHLRHKFMNAPLSKELREKYGVKRLPVRKGDTVKIVRGKFRGHEGTVAKVDLKKARIYVDGATIENSRGEQRFYPIHPSKVIITKLGEVDKVRQKIIERRKK 122
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_METST (50S ribosomal protein L24P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14 Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 2 Query: 74 RKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRK 403 RK RKA + A +R MS LS DL + F+ RS PVRK D V ++RG F+ TEGKV V K Y + V+ + K +G ++ I SN+ +T++ + D+ R L+RK Sbjct: 6 RKQRKALYTAPLHKRHNSMSVHLSDDLKEEFNRRSFPVRKGDSVEIVRGDFRGTEGKVEGVDLKNYRVLVDGASSQKQDGSKLYQPIHPSNLVLTEIYLDDERRNQALNRK 116
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_CALMQ (50S ribosomal protein L24P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14 Identity = 45/120 (37.50%), Postives = 70/120 (58.33%), Query Frame = 2 Query: 59 TTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNRVK 415 +++ RK KA A RR+ +++PLSKDL ++ +R IPVR D V +LRG FK T GKV V K+ I+V+ + K +G+ ++ I S V I +L + DK R A +D+ + + Sbjct: 6 SSSQPRKQHKALTKAPWHARRRLLTAPLSKDLQRQLGIRRIPVRVGDTVLILRGDFKGTRGKVTRVDYKRVRIYVDSASFKKPSGEAVYYPIHPSKVVIVELDQSDKARVAAIDKTRKAR 125
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_THEPD (50S ribosomal protein L24P OS=Thermofilum pendens (strain Hrk 5) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13 Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 2 Query: 116 RRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVKIGQSKG 433 R K++ +PLS +L Q+ ++ I VRK D V ++RG FK EGKV V KK IHVE T KA+G + I S V +T+L + D RK +++RK +V + +G Sbjct: 25 RSKKIVAPLSAELQQKLGIKRIRVRKGDRVLIVRGSFKGHEGKVTSVDVKKGRIHVEGATLRKADGTEVPFPIHPSKVVVTELDLSDPRRKELVERKKQVVVSGQEG 131
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_STAMF (50S ribosomal protein L24P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl24p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13 Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 2 Query: 77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRK 403 K RKA F R K ++PLSK+L +++ V+ +PVRK D VR++RG +K EGKVV + ++ ++VE R KA+ ++ I S V I KL + DK R+ I++R+ Sbjct: 11 KQRKALFNMPLHLRHKLFNAPLSKELREKYGVKKLPVRKGDVVRIMRGDWKGHEGKVVRIDLRRVRLYVEGVQRKKADQTPVYYPIHPSKVMIIKLDLSDKWRRKIIERR 120
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_ARCFU (50S ribosomal protein L24P OS=Archaeoglobus fulgidus GN=rpl24p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 71 RRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDR 400 R++ R + A ER K + + LSKDL +++ R+I VRK D+VR++RG+F EG+V+EV K+ I V+ T KA+G + V I SNV IT ++D+ RK IL+R Sbjct: 10 RKQRRWLYKTAKLHERHKLLHATLSKDLRKKYGKRAIRVRKGDKVRIMRGQFAGHEGRVLEVDMKRCRITVDGVTVTKADGTEVAVPIHPSNVMITDFGEVDEVRKKILER 120
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_SULAC (50S ribosomal protein L24P OS=Sulfolobus acidocaldarius GN=rpl24p PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13 Identity = 43/114 (37.72%), Postives = 71/114 (62.28%), Query Frame = 2 Query: 77 KNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVK 415 K RK + + R K +++ LS+DL +++ ++ I +RK D V+++RG EGKVVEV RK+ + +E T+ KA+G ++V + AS V ITKL DK R ++RK +++ Sbjct: 8 KQRKLVYNLPNHLRYKLLTARLSEDLEKQYGIKRISIRKGDSVKLMRGSQVGYEGKVVEVDRKRGRVAIEGLTKKKADGTPVYVWVHASKVIITKLDTGDKERMDAIERKRKMR 121
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_SULTO (50S ribosomal protein L24P OS=Sulfolobus tokodaii GN=rpl24p PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13 Identity = 44/104 (42.31%), Postives = 67/104 (64.42%), Query Frame = 2 Query: 113 ERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGK--FKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKLKM-DKNRKAILDRKNRVK 415 +R K +++ LSK+L Q++ ++ + +RK D V+V+RG + EGKVVEV RK I +E TR KA+G ++ I AS V ITKL + D RK I++RK + + Sbjct: 20 QRHKLLTAKLSKELQQQYGIKRLAIRKGDTVKVMRGDKDVLNFEGKVVEVNRKTGRIAIEGLTRKKADGTPVYRWIHASKVIITKLDLSDAKRKEIIERKRKAR 123
BLAST of CX301607 vs. ExPASy Swiss-Prot
Match: RL24_PYRIL (50S ribosomal protein L24P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl24p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.146e-13 Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 2 Query: 59 TTASRRKNRKAHFAATSVERRKRMSSPLSKDLFQRFHVRSIPVRKDDEVRVLRGKFKSTEGKVVEVYRKKYVIHVEKCTRDKANGQTIHVGIDASNVEITKL-KMDKNRKAILDRKNR 409 T+ R+ R + + A R K ++ LS DL ++ V+ +PVR+ D V ++RG FK GKVV+V KK I+VE TR + GQT++ I S V I + DK R+ I+ R+ + Sbjct: 5 TSIQPRRQRLSLYTAPLHLRHKLFNAKLSPDLQKKLGVKRLPVRRGDTVMIMRGDFKGVTGKVVKVDLKKVRIYVEGATRTNSKGQTVYYPIHPSKVMIIDIDTSDKIRQKIIQRRKK 122 The following BLAST results are available for this feature:
BLAST of CX301607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301607 ID=CX301607; Name=CX301607; organism=Citrus sinensis; type=EST; length=763bpback to top |