CX301582

Overview
NameCX301582
Unique NameCX301582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 2.970e-57
Identity = 111/171 (64.91%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    4 MSNPKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            M NP VFFDI+  G   GR+ FEL  D VP TAENFR L TGEKG G       YKGS+FHRIIP FMCQ             SIYGEKF+DENF LKHTGPG LSMANAGPNTNGSQFFICT KT WLDGKH VFGKV EGM++V+ ME  GS++G TSK + I +CGQL
Sbjct:    1 MVNPTVFFDISADGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIA_PIG (Peptidyl-prolyl cis-trans isomerase A OS=Sus scrofa GN=PPIA PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 110/171 (64.33%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    4 MSNPKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            M NP VFFDI + G   GR+ FEL  D VP TAENFR L TGEKG G       YKGS FHRIIP FMCQ            +SIYGEKF DENF LKHTGPG LSMANAGPNTNGSQFFICT KT WLDGKH VFGKV EGM++V+ ME  GS++G TSK + I +CGQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIA_BOVIN (Peptidyl-prolyl cis-trans isomerase A OS=Bos taurus GN=PPIA PE=1 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 110/171 (64.33%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    4 MSNPKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            M NP VFFDI + G   GR+ FEL  D VP TAENFR L TGEKG G       YKGS FHRIIP FMCQ            +SIYGEKF DENF LKHTGPG LSMANAGPNTNGSQFFICT KT WLDGKH VFGKV EGM++V+ ME  GS++G TSK + I +CGQ+
Sbjct:    1 MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 109/150 (72.67%), Postives = 118/150 (78.67%), Query Frame = 1
Query:   70 ELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQLS 519
            EL +DVVP TAENFR LCTGEKG+G   KPLHYKGS+FHR+IP FMCQ            ESIYG KFKDENF  KHTGPG LSMANAGP TNGSQFFICT KT+WLDGKH VFG+VVEGMDVV+ +E VGSQSG T KPV I +CGQLS
Sbjct:    2 ELFQDVVPQTAENFRALCTGEKGMGDR-KPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVVRAIEKVGSQSGQTKKPVKIADCGQLS 150          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 5.065e-57
Identity = 111/167 (66.47%), Postives = 123/167 (73.65%), Query Frame = 1
Query:   16 KVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            KV+FD+ I G  AGRIV  L    VP T ENFR LCTGEKG+GK+GK LHYKGS+FHRIIP+FM Q            ESIYGEKF DENF LKHTGPG LSMANAG +TNGSQFFI TV TSWLDG+H VFGKVV GMDVV K+EA G+QSG     VVI + G+L
Sbjct:   36 KVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGEL 202          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 6.616e-57
Identity = 111/171 (64.91%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    4 MSNPKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            M NP VFFDIT      GR+ FEL  D VP TAENFR L TGEKG G       YKGS+FHRIIP FMCQ             SIYGEKF+DENF LKHTGPG LSMANAGPNTNGSQFFICT KT WLDGKH VFGKV EGM++V+ ME  GS++G TSK + I +CGQL
Sbjct:    1 MVNPTVFFDITADDEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITISDCGQL 164          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIE_SCHMA (Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.514e-56
Identity = 105/168 (62.50%), Postives = 120/168 (71.43%), Query Frame = 1
Query:   13 PKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            P+VFFDI IG  DAGRIV ELR D+VP TAENFR LCTGE+G G       Y    FHR+IP FMCQ            +SIYG KF DENF L+H G G LSMAN+GPNTNGSQFFICT K  WLDGKH VFG+VV+G +VVKKME+VGS+SG   +PV+I  CG+L
Sbjct:  112 PRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 272          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 9.553e-56
Identity = 108/171 (63.16%), Postives = 120/171 (70.18%), Query Frame = 1
Query:    4 MSNPKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            M NP VFFDI + G   GR+ F+L  D VP TAENFR L TGEKG G       YKGS FHRIIP FMCQ            +SIYGEKF DENF LKHTGPG LSMANAGPNTNGSQFFICT KT WLDGKH VFG V EGM++V+ ME  GS++G TSK + I +CGQ+
Sbjct:    1 MVNPIVFFDIAVDGEPLGRVSFDLFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNGKTSKKITIADCGQI 164          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.248e-55
Identity = 105/168 (62.50%), Postives = 120/168 (71.43%), Query Frame = 1
Query:   13 PKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            PKVFFD+ + G  +GR+ F+L  D VP TAENFR LCTGEKG G SGKPLHYKGS FHRIIP FM Q            ESIYG KF DENF LKHTG G LSMANAGPNTNGSQFFI   KT WLDG HTVFG++VEG  V++ +E  G+QSG  +  V I +CG++
Sbjct:    7 PKVFFDVAVNGKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSGMPTAKVEIVDCGEI 174          
BLAST of CX301582 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.087e-55
Identity = 103/168 (61.31%), Postives = 118/168 (70.24%), Query Frame = 1
Query:   13 PKVFFDITIGGNDAGRIVFELRKDVVPITAENFRCLCTGEKGVGKSGKPLHYKGSAFHRIIPNFMCQXXXXXXXXXXXXESIYGEKFKDENFDLKHTGPGDLSMANAGPNTNGSQFFICTVKTSWLDGKHTVFGKVVEGMDVVKKMEAVGSQSGATSKPVVIKNCGQL 516
            P+VFFDI IG  D GRIV ELR D+VP TAENFR LCTG++G G       Y    FHR+IP FMCQ            +SIYG KF DENF L+H G G LSMAN+GPNTNGSQFFICT K  WLDGKH VFG+VV+G +VVKKME+VGS+SG   +PV I  CG+L
Sbjct:   18 PRVFFDIRIGNADRGRIVMELRSDIVPRTAENFRALCTGDRGFG-------YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVTISRCGEL 178          
The following BLAST results are available for this feature:
BLAST of CX301582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
PPIA_CRIGR2.970e-5764.91Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_PIG5.065e-5764.33Peptidyl-prolyl cis-trans isomerase A OS=Sus scrof... [more]
PPIA_BOVIN5.065e-5764.33Peptidyl-prolyl cis-trans isomerase A OS=Bos tauru... [more]
CYPH_ALLCE5.065e-5772.67Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
CP20A_ARATH5.065e-5766.47Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIA_MOUSE6.616e-5764.91Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIE_SCHMA2.514e-5662.50Peptidyl-prolyl cis-trans isomerase E OS=Schistoso... [more]
PPIA_FELCA9.553e-5663.16Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
CYP5_RHIOR1.248e-5562.50Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPIE_SCHJA8.087e-5561.31Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08011C12SK PhyRootSw1 Citrus sinensis cDNA clone C08011C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301582 ID=CX301582; Name=CX301582; organism=Citrus sinensis; type=EST; length=562bp
ACGATGAGTAACCCCAAAGTCTTTTTTGATATTACTATTGGAGGTAATGA
TGCTGGTAGAATTGTCTTTGAATTACGTAAAGACGTAGTACCAATCACTG
CTGAAAATTTCAGATGTCTTTGTACTGGTGAAAAAGGAGTAGGTAAATCA
GGAAAACCTCTTCACTATAAAGGTAGTGCTTTCCACAGAATCATCCCCAA
CTTCATGTGTCAAGGAGGTGATTTTACTAAAGGAAATGGAACTGGAGGCG
AATCGATCTATGGAGAAAAATTTAAAGATGAAAACTTTGATTTAAAACAT
ACTGGACCTGGTGATCTTTCAATGGCCAATGCTGGACCAAACACTAATGG
AAGTCAATTCTTCATTTGTACTGTTAAAACATCATGGTTAGATGGAAAAC
ACACTGTCTTTGGCAAAGTTGTTGAAGGAATGGATGTTGTTAAAAAGATG
GAAGCTGTTGGTTCTCAGAGTGGAGCTACCTCCAAACCTGTTGTGATCAA
AAACTGTGGACAATTGAGTTAAATGAAATTTTATTGATAAACTACTAAAA
AAAAAAAAAAAA
back to top