CX301580

Overview
NameCX301580
Unique NameCX301580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301580 vs. ExPASy Swiss-Prot
Match: NOX5_HUMAN (NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 69/222 (31.08%), Postives = 113/222 (50.90%), Query Frame = 2
Query:   86 FNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGD-DYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRA----ERENNSRGFP-----------KILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDII 703
            F  F+++H  +++V+ LLI HG              W +L VP +L+  E+      S +  V I++V + P  V  L + +P  F Y+ G Y+++N   ++ +EWHPF+I+S+P   D + +HIR+ G WT +L   F +   P   G   L R+    + + +S+G             K  IDGPYG P +     +  +L+G GIG TP  SI++ I+
Sbjct:  395 FEVFYWTHLSYLLVWLLLIFHGPNF-----------WKWLLVPGILFFLEKAIGLAVSRMAAVCIMEVNLLPSKVTHLLIKRPPFFHYRPGDYLYLNIPTIARYEWHPFTISSAPEQKDTIWLHIRSQGQWTNRLYESF-KASDPLGRGSKRLSRSVTMRKSQRSSKGSEILLEKHKFCNIKCYIDGPYGTPTRRIFASEHAVLIGAGIGITPFASILQSIM 604          
BLAST of CX301580 vs. ExPASy Swiss-Prot
Match: DUOX1_CAEEL (Dual oxidase 1 OS=Caenorhabditis elegans GN=bli-3 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 65/208 (31.25%), Postives = 112/208 (53.85%), Query Frame = 2
Query:   86 FNAFWYSHHLFIIVYTLLIVHGIKLYLTKKWYQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQGFKYKSGQYMFVNCAAVSPF--EWHPFSITSSPGDDYLSVHIRTLGDWTRQLKTVFSEVCQPAPAGKSGLLRAERENNSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDII 703
            ++AF  +H L I  Y L ++HG+   L    +      Y+  P+VL+  +R+   L    + ++I+   + P +++ +   +P+ FKYKSGQ++ V+  ++S    E H FSI SSP D+ + ++I+ +G WT +L+              S L+R+   N    FP I + GPYG   Q++  Y+V ++VG GIG TP  S + D++
Sbjct: 1159 YHAFRLTHLLNIAFYALTLLHGLPKLLDSPKFG----YYVVGPIVLFVIDRII-GLMQYYKKLEIVNAEILPSDIIYIEYRRPREFKYKSGQWVTVSSPSISCTFNESHAFSIASSPQDENMKLYIKAVGPWTWKLR--------------SELIRSL--NTGSPFPLIHMKGPYGDGNQEWMDYEVAIMVGAGIGVTPYASTLVDLV 1345          
BLAST of CX301580 vs. ExPASy Swiss-Prot
Match: FRP1_SCHPO (Ferric reductase transmembrane component 1 OS=Schizosaccharomyces pombe GN=frp1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 55/229 (24.02%), Postives = 104/229 (45.41%), Query Frame = 2
Query:   95 FWYSHHLFIIVYTLLIVHGIKLYLTKKW-YQKTTWMYLAVPMVLYACERLTRALRSSIEPVKILKVAVYPGNVLALHMSKPQ----GFKYKSGQYMFVNCAAVSPFEWHPFSITSSPGDDYLSVHIRTLGDWTRQL-KTVFSEVCQPA-----------PAGKSGLLRAEREN---------NSRGFPKILIDGPYGAPAQDYKKYDVVLLVGLGIGATPMISIVKDII 703
            F+  HH+  I + + I           W + +   +Y+ V + +Y  +R  R LRS +   K   V +   +++ +   +P+    G  + +G +M++N  ++S ++ HPF+I S P DD++ + +     +T++L K V S+                  G  G+   ER +         +S     +L+DGPYG  +  YK Y  + L   G+G + ++ I+ D I
Sbjct:  221 FFVLHHMCSIGFLITI-----------WLHHRRCVVYMKVCVAVYVFDRGCRMLRSFLNRSKF-DVVLVEDDLIYMKGPRPKKSFFGLPWGAGNHMYINIPSLSYWQIHPFTIASVPSDDFIELFVAVRAGFTKRLAKKVSSKSLSDVSDINISDEKIEKNGDVGIEVMERHSLSQEDLVFESSAAKVSVLMDGPYGPVSNPYKDYSYLFLFAGGVGVSYILPIILDTI 437          
The following BLAST results are available for this feature:
BLAST of CX301580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NOX5_HUMAN4.709e-2531.08NADPH oxidase 5 OS=Homo sapiens GN=NOX5 PE=1 SV=1[more]
DUOX1_CAEEL1.282e-2231.25Dual oxidase 1 OS=Caenorhabditis elegans GN=bli-3 ... [more]
FRP1_SCHPO5.054e-1124.02Ferric reductase transmembrane component 1 OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionC08011C10SK PhyRootSw1 Citrus sinensis cDNA clone C08011C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301580 ID=CX301580; Name=CX301580; organism=Citrus sinensis; type=EST; length=714bp
AATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGGCGCAACAAGC
TCAATCTGCCAAAACCACTTAAAAGACTCACTGGATTCAATGCCTTTTGG
TACTCACATCATCTTTTCATCATTGTCTATACCCTTCTCATTGTCCATGG
AATTAAACTCTATCTCACCAAGAAATGGTATCAGAAGACGACATGGATGT
ATCTGGCTGTCCCGATGGTTCTTTATGCTTGTGAGAGATTGACTAGAGCT
TTGAGATCAAGCATCGAGCCTGTCAAGATTCTCAAGGTTGCTGTTTATCC
TGGAAATGTCTTGGCATTACACATGTCAAAACCACAAGGCTTCAAATACA
AGAGCGGACAGTACATGTTCGTAAATTGCGCTGCCGTCTCACCGTTCGAA
TGGCATCCGTTTTCCATCACATCATCACCAGGAGATGACTACCTCAGCGT
TCATATCCGAACTTTGGGCGATTGGACTAGGCAGCTTAAGACAGTTTTCT
CTGAGGTTTGCCAGCCTGCACCTGCTGGGAAGAGCGGTCTTCTTAGAGCA
GAAAGGGAAAATAACTCTCGAGGGTTTCCAAAGATATTAATAGACGGACC
ATATGGAGCACCAGCTCAAGACTATAAAAAATATGATGTAGTGCTACTAG
TGGGGCTTGGAATTGGGGCTACTCCCATGATCAGCATAGTCAAAGACATC
ATCAACACATGAAA
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